Pseudomonas salmasensis: HU731_011230
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Entry
HU731_011230 CDS
T07619
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
psam
Pseudomonas salmasensis
Pathway
psam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HU731_011230 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psam03400
]
HU731_011230 (recB)
Enzymes [BR:
psam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HU731_011230 (recB)
DNA repair and recombination proteins [BR:
psam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HU731_011230 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_12
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QXH80332
LinkDB
All DBs
Position
complement(2541313..2544984)
Genome browser
AA seq
1223 aa
AA seq
DB search
MIGKPLALAFPLKGSQLIEASAGTGKTFTISALYLRLVLGHGGDESGFGRELLPPQILVV
TFTDAATKELRERIRIRLAEAARFFRDEIEQPDALIADLREHYDPQQWPACANRLDIAAQ
WMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMHDDA
LNWVRNNWGGPAALMPRVRALFGSERPTDETREPAELISACLQERRAALVTLKAPWQQWA
AELRDICLQAVAAKAVDGRKMQARYFEPWFEKISAWAADETLEQLDIGTGFTRLTPDGMA
EAWKGEPPQHPGIEAMAGLKASLDALPTPDAAVLQHAAGWVGKRFEEEKRRRAEMGFDDM
LIRLNAALQADGGERLASVIREQFPVALIDEFQDTDPVQYSIFDSIYRIEENHLDSGLFL
IGDPKQAIYAFRGADIYTYLRARQATTGRHHTLGTNFRSSHAMVEAVNHVFQRAETGRGA
FLFRQPNGNNPVPFHSVLSQGRSEQLQVDGHTLAAMNLWHLPTEQPISNAVYRQHLAAAC
ATQIVALLNGGQQGSAGFVKAGRLKGVLPSDIAILVRDGKEAQAVRAELASRGVRSVYLS
DKDSVFAAQEAHDLLAWLKACAEPDVERPLRAALACVTLNLSLAELERLNQDELAWESRV
MQFRGYRAIWRTQGVLPMLRRLLHDFKLPQTLIARSDGERVLTNLLHLSELLQQAASELD
GEQALIRHLAEHLALSAQAGEEQILRLESDEQLVKVVTIHKSKGLEYDLVFLPFICSAKP
VDGSRLPLHYHDEHGKSHVSLRPTAELIAQADDERLAEDLRLFYVALTRAKHACWLGIAD
LKRGNNSSSVLHLSALGYLLGAGASLGESAGLARWLLDVQQGCEAIRYDLVPDAQDILFH
PPRNQATLLAPLLPARKAAENWWIASYSALRIGDSMSAANLEAPESPQAQKLFDDERLDP
DAPRETVASGGDIHRFPRGPNPGTFLHGLLEWAGEEGFNVTPEAIEKAVGARCNRRNWEG
WIVTLSGWLEHLLQTPLPLHNERFTLSGLQQYQIEMEFWFASHTVDVLALDKLVCQHTHG
GVSRVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNWLGPDDSAYTQDAMEHSILEHR
YDLQYVLYLLALHRQLKARLPHYDYDQHVGGALYLFLRGSQSVSQGAYFTRPPRELIENL
DLLFQGKPIPPKVESAWEQGVLL
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgatcggcaaacccttggcactggcgttcccgctcaaaggcagccagttgattgaagcc
agtgctggcaccggcaagaccttcaccatctccgccttatacctgcgcctagtgctcggc
catggcggcgatgaatccggtttcggccgcgagctgctgccaccgcaaatcctcgtggtg
acgttcaccgacgccgccaccaaggagctacgtgaacgcatccgcatccgcctggccgaa
gccgcgcgcttcttccgtgacgaaatcgaacagcccgatgcgctgatcgcagacctgcgc
gagcactatgatccgcagcaatggcccgcctgtgctaatcgcctggacatcgccgcgcaa
tggatggatgaagcggcggtctcgacgatccacagttggtgccagcgcatgctgcgtgaa
cacgcgttcgacagcggcagcctgttcacacaaaccctggaaaccgaccatagcgacctg
ctgggcgaagtgctgcgcgactactggcgcttgttctgctacccaatgcacgacgatgcg
ctcaactgggtgcgcaataattggggtggccccgcggcgctgatgccacgggtgcgtgcg
ttgttcggcagcgagcggcccaccgacgaaacccgcgagccagccgaactgatcagcgcc
tgcctgcaagagcgccgcgccgcgcttgttaccctcaaggcaccttggcaacaatgggcc
gccgagttgcgggatatctgcctgcaagccgtcgccgccaaagcggtcgatgggcgcaag
atgcaagcgcgttacttcgagccctggttcgaaaagatcagcgcctgggccgctgacgaa
accctggaacaactggacatcggcaccggcttcacccgcctgacgcccgatggcatggcc
gaagcctggaaaggcgagccgccgcagcaccctggcatcgaagcgatggccggcctcaaa
gccagcctcgacgccttgccaacgcccgacgcggcggtgctgcaacacgctgccggctgg
gtcggcaaacgcttcgaagaagagaaacgtcgccgcgccgagatggggtttgacgacatg
ctgatccgcctcaacgccgccctccaggcagacggtggcgagcgcctggccagtgtgatc
cgcgagcaattcccggtggccctgatcgatgaattccaagacaccgacccggtgcaatac
agcatattcgacagcatctaccgcatcgaagaaaaccatctcgacagcggcctgttcctg
atcggcgaccccaagcaggcgatctacgcctttcgcggcgccgatatctacacctacctg
cgtgcccggcaggccaccaccggccgccatcacaccctgggcaccaacttccgctccagc
catgcgatggtcgaggcggtgaaccatgtgttccagcgtgcggaaaccggccgtggtgcg
ttcctgtttcgccagcccaacggcaataacccggtgccgttccattcggtactgtcccaa
ggccgtagcgagcagttgcaggtcgacggccacacgctggcggccatgaacctttggcac
ttgcccaccgagcagccgatttccaacgcggtttatcgtcaacacctggccgctgcctgc
gccacgcagatcgttgcgttgctcaatggtggtcagcaaggcagcgctggttttgtgaaa
gcggggcgcttgaagggcgtgttgccctcagatatcgccatccttgtgcgcgacggcaag
gaagcccaagccgtacgtgccgaactggccagccgtggtgtgcgcagtgtgtacctgtcg
gataaagactcggtatttgccgcccaggaagcccatgacctgctggcctggctcaaggcg
tgcgccgagccggacgtcgaacggccgttacgggcggctctggcctgcgtcaccctgaac
ctgtccctggcggagctggaacgtctgaaccaagacgaactggcgtgggaatcgcgggta
atgcagttccgtggctaccgtgccatctggcgtacccaaggcgtgttgccgatgctgcgg
cgcctgctccacgacttcaagttgccgcaaacccttatcgcccgcagtgatggcgagcgg
gtgctgaccaacctgttgcacctcagtgaattgttgcaacaggccgcctcggaactggat
ggcgagcaggcgttgatccgtcatttggccgagcatttggcgctgtcggcgcaggccggt
gaagaacagatcctgcgcctggaaagcgacgagcaactggtcaaagtggtgaccatccac
aaatccaagggcctggaatacgacttggtgttcttgccgttcatctgttcggccaagccc
gtggatggcagtcgcttgccgctgcattaccacgatgaacacggcaagtcccacgtcagc
ctgcgacccaccgccgagctgatcgcccaggccgatgacgagcgtctggcggaagacctg
cgtttgttctacgtggccttgacccgcgccaaacacgcttgctggctgggcatcgccgac
ctcaagcgcggcaataacagcagctcggttttgcacctctcagcgctgggctatctgctg
ggagccggcgcgtcgttgggcgaatcagcgggtctggcgcgctggttgttggacgtgcag
caaggctgcgaggccatccgttatgaccttgtgcccgacgcccaagacatcctgttccac
ccgccgcgcaaccaagcgaccctgctcgcgccgttgctgcctgcacgcaaggccgcagaa
aactggtggattgcctcctacagcgccttgcgcattggcgacagcatgagcgccgccaac
ctcgaagcgcccgaaagcccacaggcccagaagctgttcgatgacgaacgcctcgacccc
gatgcccctcgggaaacggtcgcgtccggcggggatattcaccgtttcccacgcggtccc
aacccaggcaccttccttcacggcttgttggaatgggccggtgaagaaggtttcaacgtg
accccggaggcgatcgaaaaagccgtgggcgcacgctgtaaccgccgcaactgggaaggc
tggatcgtcaccctcagcggctggctggagcacctgctgcaaacgccactgccgctgcac
aacgagcgcttcaccctcagcggcctgcagcagtaccagatcgagatggaattctggttt
gccagtcacaccgtcgacgtactcgccctcgacaagctggtgtgccagcacacccatggc
ggcgtgtcccgtgtggccgccgaaccggtgctgctcaacggcatgttcaagggctttatc
gacctgacgttcgagcacgatggccgttattacgtggccgactacaaatccaattggctt
ggccctgacgactcggcctacacccaggacgccatggaacactcgattctcgagcatcgg
tacgacctgcaatacgtactttacctgctggccctgcaccgccaactcaaggcgcgcctg
ccgcattacgattatgaccagcacgtcggcggtgccctgtacctgttcctgcgcggtagc
cagtcagtgagccagggcgcgtatttcacccgcccgccccgtgagttgatcgaaaacctg
gacctgttgttccagggcaagcccatcccacccaaggttgagtctgcctgggaacaagga
gtgctgttatga
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integrated database retrieval system
