Pseudomonas salmasensis: HU731_012765
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Entry
HU731_012765 CDS
T07619
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psam
Pseudomonas salmasensis
Pathway
psam03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HU731_012765 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psam03021
]
HU731_012765 (rpoC)
03400 DNA repair and recombination proteins [BR:
psam03400
]
HU731_012765 (rpoC)
Enzymes [BR:
psam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HU731_012765 (rpoC)
Transcription machinery [BR:
psam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HU731_012765 (rpoC)
DNA repair and recombination proteins [BR:
psam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HU731_012765 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF3150
ApbA_C
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
QXH80620
UniProt:
A0AA92RTD8
LinkDB
All DBs
Position
complement(2860410..2864609)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRIHETVNDRDGGSVSNTRIVDTTVGRALLYQVVPKGLSYDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIISAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGDEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEEVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDYGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLANEEKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtattggattggcatcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgtggtgtgatctgcgagaagtgtggcgttgaagtcgcactggccaaagttcgtcgtgag
cgcatggcgcacatcgaactggcttcgccggttgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgaacgtgttctctac
ttcgagagctatgtcgttatcgacccaggcatgaccacccttgaaaaaggtcagctgctg
aacgacgagcagtacttcgaagcgctggaagagttcggcgacgatttcgatgcccgcatg
ggtgccgaagctgtccgcgaactgctgcacgctatcgacctggagcacgagattggtcgt
ctgcgcgaagagattccgcaaaccaactccgaaaccaagatcaagaagctgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaacttgccagagtggatggtactgacc
gttctgccggttctgccgccagacctgcgtccgctggtaccgttggacggtggtcgtttc
gcgacgtccgacctcaacgacctgtaccgccgcgtgatcaaccgtaacaaccgcttgaag
cgcctgcttgatctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcaa
gaagcggtcgatgccctgctcgacaacggtcgtcgtggccgcgctatcaccggttcgaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgcctaagaagatggcactcgagctgttcaagccgttc
atcttcggcaagctggaaatgcgcggtctcgcgaccaccatcaaagcggccaagaaaatg
gtcgagcgcgaactgccagaggtttgggacgttcttgctgaagtgatccgcgaacacccg
gttctcctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaacctgta
ctgatcgaaggtaaggctatccagctgcaccctctggtctgtgccgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacactggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgacccgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgttcgcagacctgcaggaagttgaccgtgtgttccgtgccggc
gaagccgcactgcacgccaaggtcaaagtgcggatccacgaaaccgtcaacgaccgtgac
ggcggcagcgtgagcaacacccgtatcgtcgacaccactgtcggccgtgcgctgttgtac
caggttgtgccaaaaggtctgtcgtacgacgtcgtcaacctgccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtttgaaagagaccgttatcttc
gctgaccagttgatgtacacaggtttcgcttactcgactatctccggcgtttccattggc
gttaacgacttcgttatcccggatgaaaaagctcgcatcatcagtgctgccactgacgaa
gtgaaagagatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtaatcgacctttggtccaaggcgaacgacgaagtttccaaggcgatgatggccaac
ctctcgaaagagaaagtcatcgaccgtcacggcgacgaagttgaccaggaatccttcaac
tcgatgtacatgatggccgactcgggcgcacggggttctgctgcgcagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggttccatcatcgaaacgccgatcact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctccactcacggtgctcgt
aagggtcttgcggataccgcgttgaaaaccgctaactccggttacctgactcgtcgtctg
gtagacgttgcacaagatctggttgtaaccgagatcgattgcggcaccgagcacggcctg
ctgatgactccgcacattgaaggcggtgacgttgtagagccactgggtgaacgtgtattg
ggtcgtgttattgcccgtgacgtgttcaagccgggtaccgaggaagttatcgttcctgct
ggcaccctggttgacgagaagtgggtcgagttcatcgaactcaacagcatcgacgaagtg
atcgttcgttcgccgatcagctgcgaaacccgctacggcatttgcgccaagtgctatggc
cgtgacttggctcgtggtcaccaggtgaacatcggtgaagcggtcggcgttatcgctgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtacattccacatcggtggtgcg
gcaagccggacctccgcagccgacagcgttcaggtgaagaatggtggtaccgtccgcctg
cacaacctcaagcatgttgagcgagtggatggccacctggttgctgtgtcccgttccggt
gagctggccatcgctgatgactatggtcgtgagcgtgagcgttacaagctgccgtacggt
gctgtgatttcggttaaagaaggtgacaaggtcgacgctggcgcaatcgtggccaagtgg
gatccgcacactcacccaatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtactcgacgccaaagatcgtccagctgccggtaaggacatccgtcctgccgtgaagatg
gtcgatgacaacggcaaggatctgttgctgccaggcactgacgtaatcgctcagtacttc
ctgccagccaacgccctggtcggtgtagcggatggtgcgaagatcgcgatcggtgatgtt
atcgcgcgtatcccgcaagaaacttcgaagacccgtgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagctcgtcgtccgaaagaagcgtcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagaaaccaaaggcaagcgccgtctggttattaccccgaac
gacggtagcgatccgtatgaagagctgattccgaagtggcgtcacctgaacgtgttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggtccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgttaacgagatccaggacgtt
taccgcctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgagatcgctgaatccggcgattccagtttcatcaagggcgaccagatg
gaactgactcacgtactggtagaaaacgagcgcctggcgaacgaagagaaatttgtctcc
aagttcactcgcgtgctgctgggtatcaccaaggcgtcgttgtccactgagtcgttcatc
tcggcggcctccttccaggagaccactcgcgtactgaccgaagcagcggtaaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtagtcgtgggtcgtctgatcccggcgggt
accggtttggcttaccacagcgagcgtaagcgtcgccgtgatgctgacaagccgctgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcgctgaactcaagcggtaactga
DBGET
integrated database retrieval system
