Pseudomonas salmasensis: HU731_013745
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Entry
HU731_013745 CDS
T07619
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psam
Pseudomonas salmasensis
Pathway
psam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU731_013745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psam03019
]
HU731_013745
Enzymes [BR:
psam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HU731_013745
Messenger RNA biogenesis [BR:
psam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU731_013745
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QXH80796
LinkDB
All DBs
Position
3071922..3073805
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AA seq
627 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRSLL
AHLITHGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGTV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASAVEAEKPEARERPDVRNPRNPRGPKGDGPNGGGGGGG
RRDKGKDKGKEKSATSSRGERPAREQKPREGTPAREQRQPSQPPRAASDRAPDEFLDDDI
DNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAPRSGQPQGGRQNAPRNSSGGTTGTPPAK
RSGPRNGAPRDGHARREDSRSNNRRPARDDQPRSSEPAVQNPRGGPAPKIIHKESKADRF
PTPEQLDQLPGRPRGEKPALLTRNREA
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgcggctcagacaggtactggtaaaaccggcggtttcgccctcccgatcctg
gagcggttgtttcccaacggtcacccggacaaatcccaacgtcacggcccgcgccaaccg
cgcgtactggtcctgaccccaacccgcgaactcgcagcccaagtgcacgacagcttcaag
ctgtatgcccgcgacttgaagttcgtcagtgcctgcatcttcggcggcgtcggcatgaac
ccacaggttcaggccatgtcccgtggtgtcgacgtgctggtagcctgcccaggtcgtttg
ctcgacctgtgcggccaaggcagcgtcgatttgtcccacgtggaaatcctcgtattggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaaaaaggtcctcgcccgc
ctgccggccaaacgtcagaacctgctgttttcggcaacgttctcccaggacatcactgcc
ctggctggcaagctgctgcacaaccccgagcgcatcgaagtcacgccaccgaacaccacg
gtcgagcgtatcgagcaacgtgtgttccgcctggcggccagccacaagcgctcgctgctg
gcgcacctgatcacccacggtgcctgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggtctcaccgccgttgccatccac
ggcaacaagagccagaacgcacgcaccaaagccctggccgacttcaaggccggtaccgtg
cgcatcctggtggccaccgatatcgccgcacgcggcctggatatcgaccagttgccacac
gtggtcaacttcgagctgccaaacgtcgatgaagactatgtgcaccgtatcggccgtaca
ggccgtgccggtcgttcgggcgaggccatttcgctggtcgcgccggacgaagaaaaactg
ctaaaaagcatcgagcgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gatgccagcgccgtggaggccgagaagcctgaagcgcgcgagcgtccggatgtgcgtaac
ccgcgcaaccctcgcggtccgaagggcgatggcccgaacggcggcggtggtggcggtggc
cgtcgcgacaagggcaaggacaaaggcaaggaaaaatccgcgaccagcagccgtggcgaa
cgcccggcccgtgagcagaagccccgtgaaggcaccccggcccgcgaacagcgccagccg
agccagccgccacgcgctgcgtccgaccgcgcgcccgacgagttccttgacgacgatatc
gataatttcggtaaccgcgtcgactacgtgccccaggccaaaccggcccagggccgtggt
cgtcgtccaggggctccggcccagggcgcaggcgctccacgtagcggccagccacagggc
ggtcgccagaacgcaccgcgcaacagcagcggcggcaccaccggtaccccgcctgccaag
cgcagcggcccgcgtaatggcgcaccgcgtgacggccacgcccgccgcgaagactcgcgc
agcaacaaccgccgaccagcccgtgacgatcaacctcgctcgtccgagcctgcggtacaa
aacccgcgtggtggcccggcgccgaagatcatccacaaggagtcgaaagcggatcgcttc
ccgacacctgagcagttggaccaactgccaggccgccctcgtggtgagaaaccagcgctg
ctgactcgcaaccgcgaggcataa
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