Pseudomonas salmasensis: HU731_023585
Help
Entry
HU731_023585 CDS
T07619
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psam
Pseudomonas salmasensis
Brite
KEGG Orthology (KO) [BR:
psam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psam03032
]
HU731_023585 (topA)
03400 DNA repair and recombination proteins [BR:
psam03400
]
HU731_023585 (topA)
Enzymes [BR:
psam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HU731_023585 (topA)
DNA replication proteins [BR:
psam03032
]
Prokaryotic type
DNA Topoisomerases
HU731_023585 (topA)
DNA repair and recombination proteins [BR:
psam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HU731_023585 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
QXH77386
LinkDB
All DBs
Position
5244398..5247019
Genome browser
AA seq
873 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
GPVLTPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGAN
VRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVAMARTYIESEFGKTYLPEKPN
VYSSKEGAQEAHEAIRPSDANTTPAKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
SVGAGDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDTLKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAENPENGMRANQPVMT
DIPCTTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCNGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVMEIVPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQTEVDGKPTGWKAFYDGGKWKVEDKRQGA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggcaacgagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaggagcctgccgccaagcgcggcaaggccgccgcgggcgaa
ggtccggtactcacgcctaaagaaaaagcgcgcaagcaactggtttcgcgcatgggtgtg
gacccggaccatggctggaaggccaagtacgaaatccttccgggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaagatgctgacaccatctatctcgcgacggacttggac
cgcgaaggggaagccattgcctggcacctgcgcgaagccatcggtggtgatgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaagccattcaggaagcgttctccaag
ccgggcgagctggacattgaccgtgtcaacgcccagcaggcccgtcgtttcctcgaccgc
gtcgtgggctacatggtctcgccactgctgtgggcgaagatcgcccgtggcctgtccgcc
ggccgtgtgcaatcggtagcggtcaagctggtggtggagcgtgagcgcgagatccgtgcg
ttcatccctgaagaatactgggaagtccacgccgacctgggcactgccaagggcgccaac
gtgcgctttgaagtggcccgtgagaaaggcgaggccttcaagccgctgaacgaagcccag
gccatggccgcgctggagaagctcaaggcctccagctacagcatcgtcaagcgtgaagac
aaaccgaccagcagcaagccgtcggcgccgttcatcacctccaccctgcaacaggccgcg
agcaaccgcctgggcttcggggtgaagaagaccatgatgatggcccagcgtctgtatgag
gctggctacatcacgtatatgcgtaccgactccaccaacctgtcgcaagacgcggtggcg
atggcgcgtacttatattgaaagcgaattcggcaagacctacctgccggagaagccgaac
gtctacagcagcaaggaaggcgcacaagaggctcacgaagcgattcgtccttctgacgcc
aacaccacgcctgccaagctgagcggcatggagcgcgacgctgagcgcctctacgagctg
atctggcgccagttcctggcttgccagatgctgccggcgcaatacctgtctactaccgtg
agcgtgggcgcgggcgatttcgagctgcgtgccaagggccgtattctcaagttcgacggc
tatacccgtgtgatgccgcagatcgccaagcctggcgatgatgatgtgctgccggacatg
gcccagggcgacacgttgaagctgatcaagctcgacccgtcccagcacttcaccaagcca
ccggcgcgttattccgaagccagcctggtcaaagagatggaaaagcgcggtatcggtcgt
ccttcgacctacgccgcgatcatctccaccatccaggaccgtggctacgttgcgctgcac
aaccgtcgtttctattcggaaaagatgggcgacatcgtgaccgagcgtctgtcggagagc
ttctccaacctgatggactacggcttcaccgccggcatggaagagaacctcgatgacgtg
gctcagggcgagcgcgactggaaaaacgtgctcgacgagttctacggcgacttcaagaaa
aagctcgaagtggccgagaaccctgagaacgggatgcgcgccaaccagccggtgatgacg
gacattccgtgcaccacctgcggtcgaccgatgcagattcgtaccgcctccaccggcgtg
ttcctcggttgctcgggctacagcctgccgcccaaagagcgctgcaaggcgacggtcaac
ctggtgccgggcgacgaaattgcggctgacgatgagggtgaatccgagtcgctggtgctg
cgcggcaagcaccgctgcccgatctgcagcacggcgatggacgcctacctgttggacgag
aagcataagctgcacatctgcggtaacaaccccgattgcaacggctacgagatcgaagag
ggcacctaccgcatcaaaggctatgaaggcccgagcctggaatgcgataagtgcggcagc
gagatgcagctcaagaccggccgtttcggcaagttcttcggttgcaccaacccgacctgc
aagaacacccgcaaactgctgaaaagcggtgacgcggcgccgccgaagatggacccggtg
aagatgcctgaactcaagtgcgagaaggtcaacgacacctacatcctgcgtgacggcgct
tcggggctgttcctggccgccagccagttcccgaaaaaccgcgagacccgtgcgccgttg
gtgatggagattgtgccgcacaaggacgagatcgatccgaagtaccacttcctgtgtgaa
gcgccgaagaaggacccggatggtcgcccagccgtgatccgctacagccgcaagaccaag
gagcagtacgtgcagaccgaagtggacggcaagccgactggctggaaagcgttctacgac
ggcggcaagtggaaggtcgaggacaagcgccaaggcgcttga
DBGET
integrated database retrieval system
