Pseudomonas salmasensis: HU731_024580
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Entry
HU731_024580 CDS
T07619
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psam
Pseudomonas salmasensis
Pathway
psam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU731_024580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psam03019
]
HU731_024580
03009 Ribosome biogenesis [BR:
psam03009
]
HU731_024580
Enzymes [BR:
psam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HU731_024580
Messenger RNA biogenesis [BR:
psam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU731_024580
Ribosome biogenesis [BR:
psam03009
]
Prokaryotic type
rRNA helicases
HU731_024580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
QXH77576
LinkDB
All DBs
Position
5453814..5455487
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPAT
RQTVLFSATLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaacccgaatattcttgcagcc
gtcgcagcgactggctacgaagaaccttcggcgattcagcagcaatcgatcccgatcatc
atggccggtaaggacatgattggccaggcgcaaaccggtaccggtaaaaccgccgcgttc
gccctgcctattctgcattgcatcgatcctgccaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgcctttgaaacctacgccaagcaa
atgccgggtgtaactgttgtggccgtttacggcggcgcgcctatgggcccacaactcaag
gcaatccgtaatggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgtgacgaaaaagttctgtcgaccgtgaaccacctggttctggacgaagctgacgaa
atgttgaagctgggcttcatggatgacctggaagtcatcttcaaggcactgccagcgacc
cgtcagaccgtattgttctcggctaccctgccgcagtccatccgtgccattgccgaacgc
cacctgcgcgatccggagcacgtgaagatccagaccaagacccagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagcgccctggaagccaaaggctacaaagccgctgcgctgaacggcgacattgcc
cagaaccagcgtgagcgcgtgatcgactccctcaaggatggccgtctggacatcgttgta
gcgaccgacgttgccgcacgtggcctcgacgttccacgtatcacccacgtgttcaacgtt
gacatgccttacgatccagagtcctacgttcaccgtatcggccgtaccggccgtgccggt
cgcgaaggccgtgcattgctgctggtgactccacgtgagcgccgcatgctgcaagtgatc
gagcgtgttaccggccagaaagttgccgaagtccgcctgccggatgcccaggccgttctc
gatgcgcgcatcaagaaactgaccaacagcctggcgccactggtggctgacgctgaatcg
acccacggcgacctgctggaccgcctgaccgccgatatcggttgcaccccgcgtgccctg
gctgcagccctgctgcgcaaagccaccaacggtcaggccctgaccctggcagccatcgaa
aaagaacgtccactggttccgaacagcgcgccacgcggtgatcgtccagagcgttccggt
gaccgtccagaccgtggtgaccgcgagcgtcgtgctccagtgccattggctgaaggccgt
gctcgttgccgtaccgcgctgggtgcgcgtgacggtatcgctgccaagaacctgctgggc
gctatcctcaacgagggtggcctggcacgtgaagccatcggtcgcatccaggtgcgtgac
agcttctccctggtggagctgccggaagacggcctggaaaaactgctgaccaagctcaaa
gacactcgcgttgccggtaagcagctcaagctgcgtcgctaccgcgaagattga
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