Paracoccus sanguinis: HGN31_02145
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Entry
HGN31_02145 CDS
T07521
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psan
Paracoccus sanguinis
Pathway
psan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HGN31_02145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psan03019
]
HGN31_02145
Enzymes [BR:
psan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HGN31_02145
Messenger RNA biogenesis [BR:
psan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HGN31_02145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DEDD_Tnp_IS110
AAA_19
AAA_22
CMS1
HEM4
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QJD18138
LinkDB
All DBs
Position
454946..456193
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AA seq
415 aa
AA seq
DB search
MDTAFTRMGIDPRVAINLPELGLNEPTPIQAEAIPALVAGRDLLGLAQTGTGKTAAFSLP
MLTRLVTKGERAEPLSCKALILAPTRELATQIAQNVEAFARGTGIRSFRVVGGASINAQV
DRLARGVDVLIATPGRLIDLIERKAVRFDQTRYLVLDEADQMLDIGFIHALRRIAKLLPA
ERQTMLFSATMPKLMEELADSYLTDPVRVAVNPPGKAAEKIDQGVHFVNQGDKAALLAEY
LSKHPGELAIVFGRTKHGSEKLSKLLEKWGFSVAAIHGNKSQGQRERALSSFRSEETQVL
VATDVAARGLDIPQVAHVYNFDLPNVPENYVHRIGRTARAGRDGRAVAFCAPAEVGELRA
VEKAMKAQIPVIGGEPPAGPVPSPRKPGARPQGDGAARKRPARRPSRAPKGQQRG
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggacacggccttcacccgcatgggcatcgacccgcgcgtggcgatcaacctgccagag
ctggggctgaacgagccgacgccgatccaggccgaggccatcccggcgctggtcgcgggc
cgtgacctgctgggcctcgcccagaccggcaccggcaagaccgccgccttcagcctgccg
atgctgacccgcctcgtcaccaagggcgagcgggccgagccgctgagctgcaaggcgctg
atcctcgcccccacccgcgagctggccacccagatcgcccagaacgtcgaggcctttgcc
cgcggcaccggcatccgcagcttccgggtcgtcggcggcgcctcgatcaacgcgcaggtg
gaccgcctcgcccggggtgtcgacgtgctgatcgccacgcccggccgcctgatcgacctg
atcgagcgcaaggctgtccgcttcgaccagacccgctatctggtgctggacgaggccgac
cagatgctcgacatcggcttcatccacgcgctgcgccgcatcgccaagctgctgccggcc
gagcgtcagacgatgctcttctcggccaccatgccgaagctgatggaagagctggccgac
agctatctgaccgatccggtccgcgtggcggtgaacccgccgggcaaggccgccgaaaag
atcgaccagggcgtccacttcgtgaaccagggcgacaaggcggcgctgctggccgagtat
ctctccaagcacccgggcgagcttgcgatcgtcttcggccgcaccaagcacgggtccgag
aagctgtcgaagctgctcgagaaatggggcttctcggtcgccgcgatccacggcaacaag
tcgcagggccagcgcgagagggcgctctcgtccttccgctcggaagagacgcaggtgctc
gtggcgaccgacgtcgcggcgcgcgggctcgacatcccgcaggttgcgcatgtctacaac
ttcgacctgccgaacgtgcccgagaactacgtccaccgcattggccgcaccgcgcgcgcc
gggcgtgacggccgcgccgtggcgttctgcgccccggccgaggtcggcgagctcagggcc
gtggaaaaggccatgaaggcgcagatcccggtcatcggcggcgagccgccggccggcccg
gtgcccagcccgcgcaagcccggcgcccgcccgcagggcgacggtgccgcccgcaagcgc
ccggcgcgccgcccctcgcgcgcgccgaagggccagcagcgcggctga
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