Pseudomonas sp. AN-1: SK095_00975
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Entry
SK095_00975 CDS
T11500
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psao Pseudomonas sp. AN-1
Pathway
psao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SK095_00975 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psao03019
]
SK095_00975 (rne)
03009 Ribosome biogenesis [BR:
psao03009
]
SK095_00975 (rne)
Enzymes [BR:
psao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SK095_00975 (rne)
Messenger RNA biogenesis [BR:
psao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SK095_00975 (rne)
Ribosome biogenesis [BR:
psao03009
]
Prokaryotic type
rRNA processing factors
SK095_00975 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WPP46004
LinkDB
All DBs
Position
complement(220687..223857)
Genome browser
AA seq
1056 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLFDLDIESGARQQKKANIYKGRITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFIKAPEGRVNIKDVLKEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPGDMGLIVRTAGLGRSSEELQW
DLDYLVQLWTAIKEASQGRAAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSIEAQEEALN
FIQQVMPQYASKIKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEDRV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGVVCPRCNGQGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNAITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEALVGQSSYEMTPTEVEEVQPVAATRTLVRQEAAVKTVTHERPAPQAVEA
PAAPAPTPAPQAAHPTPEPSLFKGLIRSLVGLFAGKEEPKPAAEAPAQPSAGERPARSEE
RRGGRQQSRRRDGERAERQPREERQPREERKPREERQPREERQPREERKPREERQPREER
QPREERQPREERQPREERQPREERQPREERQPREERQPREERQPREERQPREERQPREER
QPREERKPREEREERPVSEETVAREETGVVEAETAEAGATRREERRARGERPPRPAPEEE
SAEQAAEELEGLEEEPGQDEQEGEGERPRRRSRGQRRRSNRRERQREAGIEELTVEEVSP
AAAAGEAVAPTVATAIAAAVAVEAAVEEAVSATPTAVEDDQAAVAVSEPLPVVETAQAIE
TVAVAQPQEAAAEAIDSEAPATETREEAAAAGGRAPNDPRERRRRREAERQAREAAATQE
AAAPAQVEPAPQAAIEAEPTVTAPEAATETPVEAPLATGSEARNAPVEAEAQPGEAQAAP
AADAEAAQPTGEPAAEAVSVETAPVSQPEEERKPQA
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaacgcaactcagcccgaagagttgcgtgttgccctggtcgac
ggccaacgcctgttcgacctcgacatcgagtcgggcgctcgccagcagaagaaggccaac
atctacaagggccgcattacccgcgtcgaacccagcctcgaggccgccttcgtcgatttc
ggcgccgagcgccacggcttcctgccgctcaaggaaatctcccgcgaatacttcatcaag
gcccccgagggtcgcgtcaacatcaaggacgtgctcaaggaaggccaggaagtcatcgtc
caggtcgagaaggaagagcgcggcaacaagggcgcggcactgaccaccttcatcagcctg
gccggccgctacctggtgctgatgcccaacaacccgcgcgccggcggcatttcccgccgc
atcgagggcgaggagcgcaacgaactgcgcgaggcgctcaacggcctcaacgccccgggc
gacatgggcctgatcgtgcgcaccgcaggcctcggccgttccagcgaggaactgcagtgg
gacctcgactacctggtgcagctgtggaccgcgatcaaggaagcctcgcagggtcgtgcc
gcgcccttcctgatctatcaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctggtcgacagcatcgaggcccaggaagaggcgctgaac
ttcatccagcaggtgatgccgcagtacgccagcaagatcaagctgtaccaggacagcgtg
ccgctgttcaaccgcttccagatcgagagccagatcgagaccgccttccagcgtgaagtg
aagctgccgtcgggcggctccatcgtcatcgacccgaccgaggcgctggtgtccatcgac
atcaactcggcgcgcgccaccaagggcagcgacatcgaggaaaccgcgctgcagaccaac
ctggaagcggccgaggaaatcgcccgccagctgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggcgaagaaccagcgcgccgtcgaggaccgcgtg
cgcgaatgcctcgaggccgaccgcgcccgcgtccaggtcggccgcatctcgcgcttcggc
ctgctggagatgtcccgtcagcgcctgcgcccgtcgctcggcgagaccagcggcgtggtc
tgcccgcgctgcaacggccagggcatcatccgtgacgtcgagtcgctgtcgctggccatc
ctgcgcctgatcgaggaagaagcgctcaaggaccgcaccgccgaggtccgcgcccaggtg
ccgatcccggtggccgccttcctgctcaacgagaagcgcaacgccatcaccaagatcgag
ctgcgcacccgtgcacgcatcgtcatcctgcccaacgaccatctggaaaccccgcatttc
gaagtgcagcgcctgcgcgacgacagcccggaagcgctggtcggccagtccagctacgag
atgaccccgaccgaggtcgaggaagtccagccggtcgccgccacccgcaccctggtgcgc
caggaggcagcggtgaagaccgtcacccacgagcgtccggcaccgcaggcggtggaagcg
cctgccgccccggcaccgaccccggcaccgcaggcggcccaccccactcccgagccgagc
ctgttcaagggcctgatccgctcgctggtcggtctgttcgccggcaaggaagagcccaag
ccggcggccgaagctcctgcccagccgagcgccggcgagcgcccggcgcgtagcgaggag
cgccgtggcggccgccagcagagccgtcgccgcgatggcgagcgcgccgagcgccagccg
cgcgaggagcgccagccgcgcgaggagcgcaagccgcgtgaagagcgccagccccgcgag
gagcgtcagccgcgtgaagagcgcaagccgcgtgaggaacgccagccccgcgaggaacgt
cagccgcgtgaagagcgccagccccgcgaggagcgtcagccgcgtgaagagcgccagccc
cgcgaggagcgtcagccgcgtgaggagcgccagccccgcgaggaacgtcagccgcgtgaa
gaacgccagccccgcgaggagcgtcagccgcgcgaagaacgccagccgcgtgaagagcgt
cagccgcgtgaggagcgcaaacctcgcgaggagcgcgaagaacgcccggtaagcgaggag
accgttgcccgcgaggagaccggcgtcgtcgaggcagaaaccgcggaagccggtgctacc
cgccgcgaggagcgcagggcgcgtggcgagcgtccgccgcgtccggcccccgaagaggaa
agcgccgagcaggcggccgaggaactggaggggctcgaggaggagccgggccaggacgag
caggaaggtgaaggcgaacgcccgcgccgccgctcgcgtggccagcgtcgccgcagcaac
cgccgcgaacgccagcgtgaagccggcatcgaggaactgaccgtcgaggaagtcagcccg
gctgctgccgcaggcgaagccgtcgcaccgaccgtcgctaccgccatcgccgcggcggtg
gccgtggaggccgccgtcgaagaagccgtcagcgcaacgcccactgcggtggaggacgac
caggccgccgtagcggtcagcgaaccactgccggtcgtcgagactgcacaggccatcgag
accgtcgcagtcgcccagccgcaagaggccgccgccgaggcgatcgacagcgaagcgccg
gcgaccgaaactcgcgaggaagctgctgcggcgggtggacgtgcgcccaacgatccgcgc
gagcgtcgccgccgccgtgaggccgagcgtcaggcccgcgaggccgccgccacccaggag
gctgctgccccggctcaggtagagcctgccccgcaggcggcgatcgaggccgaaccgacc
gtaaccgcgcctgaggccgcgaccgaaactccggtcgaggctccgctggccactggcagt
gaagccaggaatgctcctgtcgaggccgaggcccagccgggcgaagcgcaggccgccccg
gcagccgacgcggaagccgcccaaccgactggcgaaccggcagccgaagcggtgagcgtc
gagaccgctccggtcagccagcccgaggaggagcgcaagccccaggcctga
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