Paracoccus saliphilus: JHX88_04660
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Entry
JHX88_04660 CDS
T08849
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
psap
Paracoccus saliphilus
Brite
KEGG Orthology (KO) [BR:
psap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psap03016
]
JHX88_04660 (rnd)
Enzymes [BR:
psap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
JHX88_04660 (rnd)
Transfer RNA biogenesis [BR:
psap03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JHX88_04660 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
WCR05164
LinkDB
All DBs
Position
1004204..1005373
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AA seq
389 aa
AA seq
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MTTITRTEDLARFVEAAKSAPYVTVDTEFLRERTYWSKLCLIQLAIPPASTAKEPGGEAV
LVDPLAEGLSLEPLYDLFRHKSTVKVFHAARQDLEIFFHDAKLFPEPLFDTQVAAMVCGF
GEQVGYETLVRKIARASLDKSSRFTDWSRRPLSDAQKSYALADVTHLRVIYEFLSGELAR
NNRESWLAEEIAVLEDPETYITRPEDAWLKVRTRTNSPRFLALLRELARFRETYAQERNI
PRSRVFKDDAMIELASTKPASESDLGRSRLLLREARRGDIAAGILAAVKAGLEARELPQP
KKEAPGKPGNAALSDLLRVLLKAKADEAGVAPKLIASSSELDAIATGERDLPALKGWRAD
VFGQDALRLASGEIALSAGDGLVRVVPAG
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
attaccacgatcacccgtaccgaggatcttgcccgctttgtcgaggccgcgaaatccgcc
ccatatgtcaccgtcgataccgaattcctgcgtgaacggacctattggtcgaaactctgc
ctgatccagctggccattccgcccgcttcgaccgcaaaggagccggggggcgaggccgtt
ctggtcgatcccctggccgaggggctgtcgctggaaccgctttatgacctgttccgccac
aaatccacggtgaaggtgttccacgccgcgcgtcaggacctggaaatcttcttccacgat
gcaaagctgtttcccgaaccgcttttcgacacgcaggtcgcggccatggtctgcggcttt
ggcgagcaggtcggatatgagacgctggtgcgcaagatcgcccgcgccagcctggacaaa
tcctcgcgattcactgactggtcgcgcaggccgttatcggatgcgcagaaatcctatgcc
ctggccgatgtgacccatttgcgggtcatctacgaattcctgtccggagagcttgcccgg
aacaaccgggaaagctggctggccgaggagatagcggttctcgaagatcccgaaacttat
atcacccgcccggaagatgcctggctgaaagttcgcacgcggaccaactcgccacgtttc
ctggcgcttttgcgcgagttggcccggttccgcgaaacctacgcgcaagaacgcaacatt
ccccggtcgcgcgtcttcaaggacgacgcgatgatcgagctggcctcgaccaagccggcc
agtgaaagcgatctggggcggtcccggctcttgctgcgcgaggcgcgcaggggcgatatc
gcggcgggaattttggcggcagtgaaggcggggctggaggcgcgcgagttgccacagccc
aagaaggaagcaccgggcaagccgggaaatgcggcgctgtccgatcttctgcgcgtgctt
ctgaaggccaaggcggacgaggcgggggttgcgcccaagctgatcgcgtcttcctcggag
ctcgatgcgattgcgaccggagagcgtgacctgcctgcgttgaagggctggcgggcagat
gttttcggacaggatgcattgcggctggcctcgggtgaaatcgctctgtctgccggtgat
ggcctggttcgtgttgtccctgcgggctga
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