Paracoccus saliphilus: JHX88_06610
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Entry
JHX88_06610 CDS
T08849
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
psap
Paracoccus saliphilus
Pathway
psap03420
Nucleotide excision repair
psap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JHX88_06610
03430 Mismatch repair
JHX88_06610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psap03400
]
JHX88_06610
Enzymes [BR:
psap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JHX88_06610
DNA repair and recombination proteins [BR:
psap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JHX88_06610
MMR (mismatch excision repair)
Other MMR factors
JHX88_06610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
AAA_30
Viral_helicase1
UvrD_C
UvrD_C_2
AAA_11
DEAD
DUF3136
Motif
Other DBs
NCBI-ProteinID:
WCR04397
LinkDB
All DBs
Position
complement(1408131..1410200)
Genome browser
AA seq
689 aa
AA seq
DB search
MDSQKLNPVDRIAGLVSSGENFVLQGGAGSGKTEGLKRVVQKVLKANPSLRIACITHTNK
AADEISDRVSGDIKVSTIHSFLGEIISPFKKNIQHIFPKLFELPEFVALGDDHYNGDEKA
RKKEEHARFKKAHGQLENRRRTVFGEDTAKVTGKREYDKEPDTYIVQLNELIGEVNKEIR
DKLAARQPNEFFYNDTAFDNFNDPSYGHDGLIALACHIFESFPLLGRIVSDRQDCIFIDE
YQDTSADVVRVLLRCLPEDAKTIIGLFGDSEQAIYSDGIGSAQSHIDAKELILVEKEDNY
RCSPQVIDFSNKFRTDGLEQDVALKSLDDGTLETLESRQGSVKLVYDLAPAEVDTGDKAE
DRRTNAALFRSALDALVERTASEYPGYVQLKLTNKSIANDVGFGRLYQIFDDRYSEPRDR
MRKTLDRLQFGELIDLVALHRSLPGDRRSYNRLIAKLRKRGYSITSVADKAKLDEMLHSF
GSKDRAAYEAMEYAAECGLIRVSDSHKAFVDRRNELLAKLAGDPVFADFEELHRNGHRTK
IQMSKEVAATSMKHISVEMLEQEYDDRLNELRQKNFLSSLFSTELTLGEIRAFYEYEDNE
GQFSTMHKTKGTGIENVLLVIDEYGWTTEYDFVSCFTKDIPESKREIASKKLIYVACSRT
KKNLVCVRLMKSQEEADQIASFFPETIKL
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggattcacaaaaactgaatccggtagatcggatcgcagggcttgtttccagcggcgag
aacttcgttcttcaaggtggggctggaagcggaaagacagagggcttgaaaagggttgtt
cagaaggttctgaaggccaatccaagccttcgtattgcgtgcatcactcatacgaacaaa
gcggctgatgaaatttctgatcgtgtctctggcgacatcaaggtttcaacaattcactcg
ttcttgggcgagattatttcgccgttcaagaagaacatccaacatatttttccaaagctc
ttcgaattacctgagttcgttgcccttggagatgatcactataacggcgacgaaaaggcg
aggaagaaggaggagcacgcccggttcaagaaggcgcatggccagctcgaaaaccgccgg
aggacggtattcggtgaagatacagcgaaggtcaccggaaaacgggagtacgacaaggaa
cccgacacatacattgtgcagctcaatgagttgatcggcgaggtcaacaaggaaatccgc
gacaagctggcggcgagacagccgaacgagttcttctacaatgatactgcctttgacaat
ttcaacgatccttcatacggtcatgatggcctgatcgcgttggcctgccatatttttgaa
agcttcccgttgctgggtaggatcgtatcagatcggcaagattgcatctttatcgatgag
tatcaggacacaagtgcagatgtcgttcgcgtccttttgcgctgtttgcctgaagacgcg
aagaccatcatcggattgttcggcgactccgaacaggccatctattcggatggcatagga
agtgctcagtcacatatcgatgccaaagagcttattcttgtcgagaaggaggacaattat
cggtgctctccccaagtcattgattttagcaataagttccggacagacggtctagagcag
gatgtagcgctgaaatcgcttgatgacggaactcttgaaacccttgagagccgccagggc
agcgtgaagttggtgtacgacttggctcctgcggaggttgataccggagataaggcggaa
gaccggaggacaaatgcggcattgttcagaagtgcacttgatgcgctggttgaaagaacc
gcctctgaatatccgggctatgttcagttgaaactgacgaataagtctattgcgaacgat
gtcggattcggaaggctatatcagatcttcgatgatcgatattcagagcctcgggaccgc
atgcgcaagacgcttgacaggttgcagtttggcgaactgattgacctggttgctctgcac
aggagtttgccaggcgacaggcgctcatataaccgtttgatcgcgaaattacggaagcgc
ggatattctattacgtcagtcgcagataaggccaagctcgatgaaatgcttcactcgttc
gggtcgaaggatcgcgccgcctatgaggccatggagtatgccgccgaatgtggcttgata
agagtttcagacagccacaaggcatttgttgatcggcgtaatgagcttttggcaaagctt
gcaggtgatcctgtctttgccgattttgaagaactacaccggaacggccaccgtaccaaa
atccaaatgtcaaaggaggtggccgccacgagtatgaagcacatcagcgttgagatgttg
gagcaggaatacgacgacagattaaatgaactaagacagaagaactttcttagctcccta
ttttccacagagctcacgcttggtgagataagggcgttctatgagtatgaggacaacgaa
ggccagttttctacgatgcacaagacgaaaggaacgggcatcgagaatgtgcttctcgtt
atcgacgagtatggctggacgacagagtatgatttcgtgagctgctttacgaaagacatt
ccagaatcaaaacgggaaatcgcatcaaagaaacttatttatgttgcgtgctcacgaaca
aagaagaatctcgtttgtgttcgtctaatgaaaagtcaggaagaggcggatcagattgca
tccttctttcctgaaacaatcaaactctag
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