Paracoccus saliphilus: JHX88_07715
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Entry
JHX88_07715 CDS
T08849
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psap
Paracoccus saliphilus
Pathway
psap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JHX88_07715 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psap03400
]
JHX88_07715 (mfd)
Enzymes [BR:
psap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JHX88_07715 (mfd)
DNA repair and recombination proteins [BR:
psap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JHX88_07715 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
AAA_30
AAA_16
Cas3-like_C_2
RecG_dom3_C
UB2H
AAA_22
DUF7053
Motif
Other DBs
NCBI-ProteinID:
WCR04593
LinkDB
All DBs
Position
1624417..1627875
Genome browser
AA seq
1152 aa
AA seq
DB search
MSNQLILSGAPEGYDAALIAREAARSENGGAPVIHIARDDRRMAAMREALGFLAPGLAIL
DFPAWDTTPYDRVSPAPAIQAARMATLAGLAQGAVRGPFVLLTTLNAVLQRVPARELVGG
ASFAARVGDRIDEAGLRDFLIRMGFVQSPTVTEPGDYAIRGGIIDIYPPGESGPIRLDLF
GDVLDGARRFDPVSQRTTEKLSRVEIAPMSEVILDEPAITRFRQNYRAEYGGGSNDPLYE
GVSAGRKMSGVEHWLPWFHDRMESLFDYLPGASVVMDDHVGQVIDARREMIREQFQARRE
AMAMKGRSDTVYKPVPPDEMFPTEEEWGNWLDPHRVLRLSVLPQPPGPGVLDAGGRPGRN
FAPERQSENLNLFNALSDHIQGLCKDGRVIIASFSDGARDRLAGLISDEGVTGAQQIGDI
RDLPDRPGALGLAVWPLEEGFTADGRALGRLTVISEQDVLGDRLIRGAKKRRRAENFLQD
TQALTPGDLVVHVEHGIGRYTGLETITAAGVPHDCVALEYAGGDRLFLPVENIELLSRYG
HEEGMLDRLGGGAWQARKARLKERIKLIADKLMRVAAERLLRPAPVLEPEDHDWQAFSAR
FPYSETDDQAAAIEDVLSDLSAGRPMDRLVVGDVGFGKTEVAMRAAFVAASQGLQVAVIA
PTTLLARQHFNTFAERFRGTAISVRPLSRFVGTKDAAKTREGLADGSVDIVVGTHAVLAK
QVRFKRLGLLVIDEEQHFGVTHKERLKELRSDIHVLTLTATPIPRTLQLSLTGVRDLSII
GTPPVDRLSIRTYASEFDSVTIREALLREKYRGGQSFFVVPRLSDLPDVEHWLTENVPEI
TFIVAHGQLAAGDLDQRMNAFYDGSHDVLLATSIVESGLDIPTANTMVVWRSDMFGLAQL
YQIRGRVGRSKTRAYCYLTTKPRSPLTPQAIRRLKFLGAIDSLGAGFNLASQDLDLRGAG
NLLGEEQSGHIKEVGFELYQAMLEETIAKLKSGEIEGTPEDEWAPQLNLGVPVTIPEHYI
PDLDVRLGLYRRLAELTTKVELEGFAAELIDRFGTLPREVNTLLLVIRIKAMAKRAQIAK
LDAGPKGATVQFHNDKFPNPAGLVEFLTDQRGQAKVTDNKIIIRRDWKTDADRIKGAFAV
ARDLAAKAKVAK
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccagttgatcctctctggcgcgcctgaaggctatgacgccgccctgatcgcc
cgcgaagcggcgcgatccgagaatggcggtgcgccggtcatccatatcgcccgcgatgac
cgccgcatggcggcgatgcgggaggccctgggattcctggcgccggggctggcgatcctg
gatttcccggcatgggataccacgccctatgaccgggtctcgcccgcacccgcaatacag
gcggcgcgcatggcaacgctggccggtctcgcgcagggggcggtcagggggccattcgtc
ctgctgaccactttgaacgcggtgctgcaacgggtcccggcgcgtgagctggtcggcggg
gccagtttcgccgcccgtgtcggtgatcgcatcgacgaggcggggctgcgcgatttcctg
atccggatgggcttcgtgcaatctccgaccgtgaccgagcccggcgattacgccatccgt
ggcgggatcatcgatatctacccgccgggcgaatccgggccgatccggctggacctgttc
ggcgacgttctggacggtgcgcgccgtttcgatccggtcagccagcggacgaccgaaaag
ctgtcgcgcgtcgagatcgcgccgatgtccgaagtcatcctcgatgagcccgcgatcacc
cggttccgccagaactaccgcgccgaatacgggggcggcagcaacgatccgctctatgaa
ggggtcagtgccggtcgcaagatgtcgggggtggagcattggctgccatggttccatgac
cggatggagagtcttttcgactaccttcccggcgcctcggtggtgatggacgatcatgtc
gggcaggtcatcgatgcccggcgcgagatgatccgcgaacagtttcaggcccgccgcgaa
gcgatggcgatgaaggggcgcagcgataccgtctacaagccggtgccgcccgacgagatg
ttcccgaccgaagaggaatggggcaattggctcgacccgcatcgggtgctgcgcctgtct
gtgctgccccagcctccggggccgggcgtgctggatgcgggcggacggccggggcgcaat
ttcgcgcccgagcggcagtcggaaaatctgaatttgttcaatgcgctatctgatcatatt
cagggattgtgcaaggatggccgcgtcatcatcgccagcttttccgatggtgcccgcgac
cgtttggccgggctgatctcggatgaaggcgtcaccggtgcgcaacagatcggcgatatt
cgcgacctgcccgacaggcccggagccctaggcctggccgtctggccgctggaagagggg
ttcacggcggatggacgggcgcttggccgactgacggtgatctcggagcaggacgtgttg
ggcgaccgcctgatccgtggcgcgaagaaacgccgccgggccgagaatttcctgcaggac
acacaagcccttacccccggcgatctggtcgtgcatgtcgagcatggtatcgggcgctat
accgggctggaaacgatcacggccgccggcgtgccgcatgattgcgtggcgctggaatac
gcgggcggcgaccgactgtttctaccggtcgagaatatcgaactgctcagccgctacggc
catgaagagggaatgctggaccggctcggcggcggtgcgtggcaggcccgcaaggcgcgg
ctgaaggaacgtatcaagctgatcgccgacaagctgatgcgagtcgccgccgaacgcctg
ctgcgtcccgccccggttctggaaccagaggatcacgactggcaggctttctccgcgcgg
tttccctatagcgaaaccgacgatcaggcggcggcgatcgaggatgttttgtccgatctg
tcggcgggccgtccgatggaccggctggtcgtcggcgatgtcggtttcggcaagaccgag
gtagcgatgcgcgcagcctttgtcgccgcctctcagggattgcaggtggccgtcatcgcg
ccgaccaccttgcttgcccgccagcatttcaacaccttcgccgagcgtttccgcggcacc
gcgatcagcgtccgtcccctgtcgcgcttcgtcggcaccaaggatgctgccaagacgcgt
gaggggttggccgacggctcggtggatatcgtcgtcggaacccatgccgtgctggccaag
caggtgcgcttcaagcgccttggcctgctggtcatcgacgaagagcagcatttcggtgtc
acccacaaggaacggcttaaggagttgcgcagcgatatccatgtgctgacgctgaccgcg
acgccgatcccgcgcacgctgcaactgtctttgaccggggtgcgcgacctgtcgatcatc
ggcacgccacccgtggaccgcctgtccatccgcacctatgccagcgaattcgacagcgtg
accatccgcgaggcgctactgcgtgaaaaataccgtggcggacaaagcttcttcgttgtc
ccgcgcctgtcggacctgcccgatgtcgagcattggctgaccgagaacgtccccgagatc
acctttatcgtcgcgcatggccaattggcggcgggcgatctggatcagcggatgaacgcc
ttttacgacggcagccatgacgtgctgctggcgacctcgatcgtcgaaagcggtctcgat
attccgacggcgaacacgatggttgtctggcgctcggacatgttcgggctggcgcagctt
taccagatccggggccgggtggggcgctcgaagacccgcgcctattgttacctgaccacc
aaaccgcgcagccccctgaccccgcaggcgatccggcggctgaaattccttggcgccatc
gacagcctcggggctggtttcaacctcgcctcgcaggatttggacctgcgcggggccggc
aacctgctgggggaagagcaatccggccatatcaaggaggtcggcttcgaactttaccag
gcgatgctcgaggaaaccatcgccaagctgaaatcgggcgagatcgagggcacgccagaa
gacgaatgggcgccacagttgaatctcggcgtgccggtgacgatccccgaacattacatc
cccgatctcgatgtgcggcttggcctgtatcgccgccttgccgagctgactaccaaggtc
gaactcgaaggctttgccgccgagctgatcgaccgtttcggtacgctgccgcgagaggtg
aataccctgttgctggtgatccgcatcaaggcgatggcaaagcgcgcccagatcgccaag
ctggatgccgggccgaaaggcgcgacagtgcaattccataacgacaagttccccaacccg
gcggggctggtggaattcctgaccgatcagcgtgggcaggccaaggtcacggataacaag
atcatcattcgccgcgactggaagacggatgccgatcgcatcaagggcgcctttgccgtt
gcccgtgacctggccgcaaaggcaaaggtggcgaagtga
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