Paracoccus saliphilus: JHX88_14100
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Entry
JHX88_14100 CDS
T08849
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
psap
Paracoccus saliphilus
Pathway
psap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JHX88_14100 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psap03019
]
JHX88_14100 (rnr)
03016 Transfer RNA biogenesis [BR:
psap03016
]
JHX88_14100 (rnr)
Enzymes [BR:
psap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JHX88_14100 (rnr)
Messenger RNA biogenesis [BR:
psap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JHX88_14100 (rnr)
Transfer RNA biogenesis [BR:
psap03016
]
Prokaryotic type
tRNA degradation factors
JHX88_14100 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
WCR02036
UniProt:
A0AA45W2I7
LinkDB
All DBs
Position
complement(2925456..2927699)
Genome browser
AA seq
747 aa
AA seq
DB search
MTQIPSKQQIMDWVAEHPDANSKRDIAKAFGIKGADRIELKRLLKELEAEGQLERRRRHY
LDPEKLPPVTVLELLAPDGSGDLFARPLEWRGEGPMPRILFTPREADPALGQGERFLSRL
VEVHGEDYQYEARFMRRIAAAPNRIVGVFRKETEGGRIVPIDKGQDREWRVRPDATLGAQ
SGELVQAEQAGPKGRLGLPLARIVDRLGDPSAPRSVSLIAIHQHGIPDEFPDKVIAEAEA
QKPATMKGRDDLRDLPLVTIDPADARDHDDAVAGSVEEDGGATIWVAIADVAHYVRSGSA
LDREAWNRGNSTYFPDRVVPMLPEALSADLCSLHEGEDRPVIAVRMRLDAQGNKVSHTFH
RGMMNSRASLSYGQAQSAADGKPDEQTEALLDSVIKPLWHAYGLLKSARERRQPLDLDLP
ERRIELTEDGRVKAVNFRERLDAHRLIEEFMVLANVAAAEELSRRQRPLLFRVHEEPSLD
KIDALREVAQASGFTLAKGQVLQTSHLNRLLAQSEGTDFDELINITTLRSMTQAYYHPEN
FGHFGLALKNYAHFTSPIRRYSDLVVHRALITGHGWGKDGLSDGDIERLSETATHISETE
RRSMTAERDTTDRYLAAYLADRVGTEMTGRISGIQRFGAFIKLDETGADGLLPIRDIGQE
YFHFDPDAQKLIGADTEIEVGIGQRVTVRLAEAVPVTGGLTLELLELEGEALPSAPGKGK
RSRSPRRVSTKSRLAEIKRAKKRRRKK
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgacccagattcccagcaaacaacagatcatggattgggtcgccgagcatcccgacgcc
aattccaaacgtgacatcgccaaggctttcggcatcaagggcgcggatcggatcgagctg
aagcggctgctgaaggaactcgaggccgagggtcagcttgaacgccgccgtcgccattat
ctcgaccccgagaaactgccccccgtgacggtgctggaactgctggccccggacggctct
ggcgatcttttcgcccgcccgctggaatggcgtggtgaagggccgatgccgcgtatcctg
ttcaccccgcgcgaagccgatccggcattggggcaaggtgaacgcttcctctcgcggctg
gtcgaggtgcatggcgaggattaccaatacgaggcgcgtttcatgcgccgcatcgctgcc
gcgcccaatcggatcgtgggcgtgttccgcaaggagaccgagggcgggcgtatcgtgccc
atcgacaaggggcaggaccgtgaatggcgggtccgaccggatgccacgctcggggcgcag
tcgggggaattggtgcaagccgaacaggccgggccgaaaggtcgccttggtttgccattg
gcccggatcgtggaccggttgggcgatccttcagcccctcgctcggtcagcctgatcgcc
attcatcagcacggaatccccgacgagttccccgacaaggtcatcgccgaggccgaggcg
caaaagcccgcgaccatgaagggccgcgacgatctgcgcgacctgcccttggtcaccatc
gacccggcggatgcgcgggatcacgacgacgctgtcgcgggttccgtcgaggaagacggc
ggcgccaccatctgggtcgcgatcgccgatgtggcgcattacgtccgttccggttcggcg
ctggaccgtgaagcttggaaccgtggcaactcgacctattttcccgaccgcgtggtgccg
atgctgcccgaggcgctctcggcggatctctgttcgctgcatgagggcgaggatcgcccg
gtgatcgcggtgcgcatgcggctggacgcgcagggcaacaaggtcagccacacattccat
cgcggcatgatgaacagccgggccagcctgtcatacgggcaggcgcagtcggcagccgac
ggcaagcccgacgaacagactgaagccttgctggactcggtgatcaagccgctctggcat
gcttacggcttactgaaatcggcgcgtgagcggcgtcagccgctggatctggacctgccg
gaacgccggatcgagctgaccgaggatggccgcgtcaaagcggtgaatttccgcgaacgc
ctggacgcgcatcggctgatcgaggaattcatggtgctggccaatgtcgccgccgccgag
gaattgtcccgccgtcagcgcccgctcttgttccgggtgcacgaggaaccctcgctggac
aagatcgacgcactgcgcgaggtggcgcaagcatcggggttcacgctggccaaggggcag
gtcttgcagaccagccatctgaaccggctactggcccaatccgagggcaccgatttcgac
gagctgatcaatatcaccacgctacgctcgatgacgcaggcttactatcatcccgagaat
ttcggccatttcggcttggcgttgaagaactatgcgcatttcacctcgcccatccgccgc
tattccgatctcgtcgtgcatagggcactgattaccgggcatggctggggcaaggacgga
ttatccgacggcgatatcgagcgcctctctgaaaccgccacccatatcagcgagaccgag
cgccgctcgatgacggccgagcgcgatacaaccgaccgctatcttgccgcttatctggcc
gaccgggtcggcacggaaatgaccggacgcatcagcggtatccagcgtttcggggccttc
atcaagctggatgagacgggggccgatggcttgctgccgatccgcgatatcgggcaggaa
tatttccacttcgaccccgacgcgcagaagctgatcggcgccgatacggagatcgaggtc
ggcatcgggcaacgtgtcacggtacgtcttgccgaagcggtgcccgtcaccggggggctt
acactggaactgcttgaactcgaaggcgaggcactgccgagcgctccgggcaaaggcaag
cgcagccgtagcccgcgccgggtctcgacgaaatccagattggcagagatcaagcgcgcc
aagaaacgccgccgcaagaaataa
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