Paracoccus saliphilus: JHX88_15615
Help
Entry
JHX88_15615 CDS
T08849
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psap
Paracoccus saliphilus
Pathway
psap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JHX88_15615 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psap03021
]
JHX88_15615 (rpoC)
03400 DNA repair and recombination proteins [BR:
psap03400
]
JHX88_15615 (rpoC)
Enzymes [BR:
psap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JHX88_15615 (rpoC)
Transcription machinery [BR:
psap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JHX88_15615 (rpoC)
DNA repair and recombination proteins [BR:
psap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JHX88_15615 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WCR02303
LinkDB
All DBs
Position
complement(3243213..3247442)
Genome browser
AA seq
1409 aa
AA seq
DB search
MNQELASNPLNPLAAPRQFDEIKISLASPEEILAWSFGEVKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGLVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLAYGQLMSEEEYLDAQDNYGADAFT
ADIGAEAIRTMLANIDLAATAEQLREDLKEATGELKPKKIIKRLKIVESFLESGNRPEWM
VLTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGNNRRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYITMEREGMKGEGMAFANVEEVEHAL
AAGEVHLHAKIMARLRQVDENGNEVLVRFETTPGRIRLGALLPLNAKAPFELVNRLLRKK
DVQHVIDTVYRYCGQKESVIFCDQIMGMGFREAFRAGISFGKDDMVIPDNKWTIVDEVQS
QVKEFEQQYLDGLITQGEKYNKVVDAWSKCNDRVTESMMSTISASKRDENNAEQEPNSVY
MMAHSGARGSVNQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIIREHDCGTEHSITASAAINDGEVIAPLSERILGRV
AAEDVVVPGEDEIIARAGDLIDERKADEIEQAGVLTVRIRSALTCESEDGVCALCYGRDL
ARGTLVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGGQQSFQAASHEGKVEFRNEN
VLANANGEQVVMSRNMQVVIVDDQGVERASHKLFYGSKLFVKAGERVIRGAKLFEWDPYT
LPIIAEKGGVAKFVDLVSGLSVRDETDDATGMSQKIVTDWRSAPRSNDLKPEIIIMDANG
EPVRNDQGNPVSYPMSVDAILSIEDGQEIRPGDVVARIPREGARTKDITGGLPRVAELFE
ARRPKDHAIIAEADGYVRFGKDYKNKRRIAIDPSEEGQEPIEYMVPKGKHIPVQEGDFVQ
RGDYIMDGNPAPHDILRILGIEALADYLIDEVQDVYRLQGVKINDKHIEVIVRQMLQKIE
IIDSGETTLLKGEHVERDEFEEENAKIEARGGRPAVGEPVLLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATTRVRRIASERDNEVVEARRA
EAEAAAALAAPEPAAEAAPADMPDAGSEE
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaacttgcctccaatcccctgaacccgctggcagcgccgcggcagttcgac
gaaatcaagatctcgctggcctcgccggaagaaattctggcctggtccttcggcgaggtg
aagaaacccgaaaccatcaactaccgcacgttcaagcccgagcgtgacgggctgttctgc
gcgcgtatctttggcccgatcaaggactacgagtgcctgtgcggcaaatacaagcggatg
aaatatcgcggcctcgtctgcgagaaatgcggtgtcgaggtgacgttgcaaaaggtccgc
cgcgagcgcatgggccatatcgaactggccgcgcctgtcgcacatatctggttcctcaag
tcgctgccctcgcgcatcggcctgatgctggacatgacgctgcgcgacctggagcggatc
ctctatttcgagaattacgtcgtcatcgagcccggcctgaccgatctggcctatggccag
ttgatgagcgaagaggaatatctcgacgcgcaggacaattacggtgccgatgcgttcacc
gccgatatcggcgccgaggcgatccgcaccatgctggccaatatcgacctggcggcaacg
gcagaacagctgcgcgaggatctgaaagaggccaccggtgaactgaagccgaaaaagatc
atcaagcggctgaagatcgtcgaaagcttcctcgaatccggcaaccgtccggaatggatg
gtgctgaccgtcgttccggtcattccgccggaactgcgtccgctggttccgctggacggt
ggccgctttgcgacttcggatctgaacgacctgtatcgccgggttatcaaccggaataac
cgtctgaagcgcctgatcgagctgcgtgcgcccgatatcatcgtccgcaacgaaaagcgg
atgctgcaggaatcggtcgatgctctgttcgacaatggccgtcgcggccgcgtcatcacg
ggcaacaaccgtcgcccgctgaagtcgctgtcggacatgctgaaaggcaagcagggccgc
ttccggcagaacctgttgggcaagcgcgtggacttctcgggccgttcggtcatcgtgacc
ggtcccgagcttaagctgcatcaatgcggtttgcccaagaagatggcgctcgaactgttc
aagccgttcatctattcgcggcttgaggcgaaggggctgtccagcaccgtcaaacaggcg
aaaaagctggtcgagaaagagcgccccgaggtctgggatatcctcgacgaggtgatccgc
gagcatccggttctgctgaaccgtgcgccgacgctgcaccgccttggcatccaggcattc
gagccgatcctgatcgagggcaaggcgatccagcttcatccgctggtctgctcggccttc
aacgccgatttcgacggcgaccagatggccgtgcacgtcccgctgagcctcgaggcgcag
ctggaagcgcgtgtgctgatgatgtccacgaacaacgtgctgtcgcctgccaacggcgcg
ccgatcatcgtgccgtcgcaggatatgatccttggcctctactacatcacgatggagcgc
gagggcatgaagggcgagggcatggctttcgccaatgtcgaagaggtcgagcacgccctt
gccgccggcgaggtgcatctgcacgccaagatcatggcgcggctgcgccaggtcgacgag
aacggcaacgaggttctcgttcgcttcgagacgacgccgggccgcatccggttgggcgcc
ttgctgccgttgaacgccaaggctccgttcgagctggtcaaccgcctgctgcgcaagaag
gatgtgcagcatgtcatcgacacggtctatcgctattgcggtcagaaggagtcggtgatc
ttctgtgaccagatcatgggcatgggtttccgcgaagccttccgcgccggcatcagcttc
ggcaaggacgacatggtgatcccggacaacaagtggaccatcgtggacgaagtccagagc
caggtgaaagagttcgaacagcaatatctggacggcctcatcacccagggtgagaagtat
aacaaggtcgtggatgcctggtcgaaatgtaacgaccgggtgaccgaatcgatgatgtcc
accatctcggccagcaagcgggacgagaacaatgccgagcaggaaccgaacagcgtctac
atgatggcgcattcgggtgctcggggctcggtcaatcagatgaagcagctcggcgggatg
cgcggcctgatggccaagccctcgggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgttcttgaatacttcaactcgacccacggcgcgcggaaaggtctg
tcggacaccgctctgaagacggcgaactcgggctacctgacccgccgtctggtggatgtc
gcgcaggactgcatcatccgcgagcatgattgcggcaccgagcattcgatcaccgcctcg
gcggcgatcaacgatggtgaggtgatcgcgccactgtccgagcgcatcctgggccgtgtc
gcggccgaggacgtggtggttccgggcgaggacgagatcatcgctcgcgccggggatctg
atcgacgaacgcaaggccgacgagatcgagcaggcgggcgttctgacggttcgcatccgg
tctgccctgacctgcgaatccgaagatggggtctgcgcgctttgctatggccgcgaccta
gctcgcggtacgctggtcaatatcggcgaggctgtcggcatcatcgccgctcagtccatt
ggcgagcccggcacgcagctgacgatgcggaccttccatatcggcggtatcgcccagggc
gggcagcagtcgttccaggctgcttcgcatgaaggcaaggtcgagttccgtaacgagaac
gtgctggccaatgcgaatggcgaacaggtcgtgatgtcgcgcaacatgcaggtggtcatc
gtcgatgatcagggtgtcgagcgtgccagccacaagctgttctatggcagcaaactgttc
gtgaaagccggagagcgggtcattcgcggcgccaagctgttcgaatgggatccctatacc
ctgccgatcattgccgaaaagggcggcgtggcgaaattcgtcgatctcgtttcgggcctg
tcggtccgcgacgaaaccgacgatgcgaccggcatgtctcagaagatcgtgactgactgg
cgctctgcaccacgcagcaacgacctgaagccggaaatcatcatcatggatgccaatggc
gagccggttcgcaacgatcagggcaacccggtcagctatccgatgtcggtggacgccatt
ctgtcgatcgaagacggccaggaaatccgtccgggcgacgtggtggctcgtattccgcgc
gaaggtgccagaaccaaggacatcaccgggggccttccccgcgtggcggaactgttcgag
gcccgtcgtcccaaggatcacgccatcatcgccgaggcagatggctatgtgcgctttggc
aaggactacaagaacaagcgccgtatcgccatcgatccgtccgaggaaggtcaggagccg
atcgaatacatggtgccgaaaggcaagcacatcccggtgcaggaaggcgacttcgtgcag
aggggcgactacatcatggatggcaacccggctccgcatgacatcctgcggatcctgggg
atcgaggcgctggccgactacctgatcgacgaggtgcaggacgtctaccggttgcagggt
gtgaagatcaacgacaagcatatcgaggtgatcgttcgccagatgcttcagaagatcgag
atcatcgacagcggtgagacaaccctgctcaagggcgagcatgtcgagcgcgacgagttc
gaggaagagaatgccaagatcgaagcgcggggcggtcgtccggccgtgggtgagccggtc
ctcctggggatcaccaaggccagcctgcagacccgcagcttcatctcggcggcctccttc
caggaaacgacccgcgtgctgaccgaggcttcggtccagggcaagcgcgacaagctggtc
gggctgaaagagaacgtcatcgtcggccggttgatcccggcaggcacaggtggcgcaacc
acccgcgttcgccgcatcgcttccgagcgtgacaacgaggtggtcgaagcccgccgcgcc
gaggccgaagccgccgcggctctggccgcgccggaaccggcagctgaagctgcaccggcc
gacatgcccgatgcgggcagcgaagagtga
DBGET
integrated database retrieval system
