Lathyrus oleraceus (garden pea): 127074552
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Entry
127074552 CDS
T08598
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
psat
Lathyrus oleraceus (garden pea)
Pathway
psat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127074552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psat03041
]
127074552
03009 Ribosome biogenesis [BR:
psat03009
]
127074552
Enzymes [BR:
psat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127074552
Spliceosome [BR:
psat03041
]
Complex A
U1 snRNP components
U1 related factors
127074552
Complex B
127074552
Ribosome biogenesis [BR:
psat03009
]
Eukaryotic type
Pre-60S particles
Helicases
127074552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
127074552
NCBI-ProteinID:
XP_050871839
LinkDB
All DBs
Position
1:397437040..397443562
Genome browser
AA seq
1156 aa
AA seq
DB search
MATTETASAALGPRYAPDDPTLPKPWLGLIDGGTGTLYYWNPETNVTQYDKPGAPPVPAA
STPGLAPIPSGAGQQQMLQGQPSQQQQGNHFAQQQQSPHVAQTTQQQPSQAAQPVQQQQN
SQLAQPTQQPGLHQARPQMMQPHGQQMMQYQGQQFQQMHHQMPPQVIRPQQFGQGNPQDH
STHVVQPQAPQFTPQNMHYTGYQQNMVTPRQPNSQQIQPNMLPSGQSTPQQNQHNIHNQP
FENQQDFKTAMPKVEETEFKNGSQVGFSPSQYQQRSALPGQNNPNVPAEVSSGQVSIAGV
NSGQPQQFRGFSGSMQQPAPTMQSQQGGSDLFYQHVPNFQNQLSPGMMHGHPSNAHPSNA
HPAAQKMGHEDNVHGRAGNDYYYNSNKEMPPMGRQQSDMAQMPISRNQQDMRIGNSPFQN
NVPSGNGSGITGNAMGNMFTSPIGVPSALSSNSFTRPPYGGSSDVTDLSPAEIYCRQHEV
TATGDNIPPPFMTFDSTGFPPEILQEVCSAGFLNPTPIQAQTWPIALQGRDIVAIAKTGS
GKTLGYLMPAFILLRQRRNNSLNGPTVLVLAPTRELATQIQVEVFKFARSSRVSCTCLYG
GASKIIQLKELDRGADIVVATPGRLNDILDMKKIDFRQVSLLVLDEADRMLDMGFEPQIR
KIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKSITQYVEVVPQ
MEKQRRLEQILRSQERGSKIIIFCSTKKLCDQLARSIGRSFGAAAIHGDKSQGERDWVLG
QFRNGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAYTFF
SEQDWKHAGDLIKVLEGANQHVLPELRQIASRGPPSFGKDRGGMTRFDSGGGGRWETGGR
GGMRDGGGFGPRGGMRDGGGFGGGFGGRGGTRDGGSFGSRGGMRDGAGGQGERGGDFFPG
RGNRGRGFGPPRGGPVGWGRGDRGGPSDRYNMDGRGQGRGRGRFDNRRDVQRSRDRSYSR
SPERVRTWDINRSSSRSRSRSRSWSRGRSRSRSWSRGRSRSYSRSPRRSHSRDRSYSRSR
SPKKNNRRVKSKFSDKIDIVAPEAGASDPKMFPISANTQESSVLGTEHLEQLPVVGSTGP
DNPEAVVDVSHQSSNI
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaacagagacagcttctgctgcgcttggtcctcgatatgcaccggatgatccc
acccttccgaaaccgtggttggggttgattgatggaggtactggtacgttgtactattgg
aatcctgaaaccaatgttactcaatatgataagcccggtgccccacctgtgcctgctgct
tctacgccgggtttggcgcctataccgagtggggcggggcagcaacagatgctgcaaggg
cagccctcacaacaacagcaggggaaccattttgcccaacagcaacagagtcctcatgtg
gcgcagactactcagcagcagccttctcaggctgctcaaccagtgcagcagcagcagaac
tcacagcttgcacagccgacgcaacagcctgggttacaccaagctagaccacagatgatg
cagcctcatgggcagcagatgatgcagtatcaaggacagcaatttcagcaaatgcatcat
cagatgcctccgcaggttattcgtccacaacaatttgggcaaggtaatcctcaggatcat
agtacacatgttgtgcaaccgcaagcacctcaattcactcctcagaacatgcattatacg
gggtatcaacaaaacatggttacacccaggcaacctaactcccagcagattcagccaaac
atgctaccatctgggcagtcaacaccccagcagaatcagcataacatacataaccagcct
tttgaaaaccaacaagattttaaaacagcaatgccaaaggtggaggaaacagagtttaaa
aatggaagccaagttggtttctcgccgtcacagtatcaacaaaggagtgccttgcctggt
cagaacaatccaaatgttcctgctgaagtaagttctggtcaagtgtctattgcaggtgtt
aattctggccaaccacaacaattcagagggttttcaggcagcatgcagcagcctgccccg
acaatgcagtcacagcagggtggttctgatttattttatcaacatgttcctaactttcaa
aaccagttgagcccgggaatgatgcatgggcatccttctaatgcacatccttctaatgcg
catcctgctgcccaaaagatgggacatgaggacaacgtgcacggtagagctggaaatgac
tattattataattctaacaaagagatgccaccaatgggtcgtcagcagtcagatatggcc
caaatgccaatttccagaaatcagcaggatatgaggattggcaattccccttttcaaaac
aatgtccctagtggaaatggaagcggtattactgggaatgctatgggtaacatgttcacc
tctcctattggagtaccttctgccctttcaagtaactcatttacaaggcctccttatggt
gggtcttcagatgttactgatctctcaccagctgaaatatactgtcggcaacatgaagtt
acagcgacgggtgacaacattccacccccattcatgacatttgattccaccgggttccct
ccagagatactgcaagaggtatgttctgcaggcttcttgaatccaacaccaatacaagct
caaacatggcctattgccctacagggtagagacatagtggcgattgccaaaacaggctct
gggaaaacactaggctacttaatgccggccttcattcttcttaggcagcgacgcaataat
tctctgaatggccccaccgtcttggttttggctccaacacgagaacttgcaacacagatc
caagtggaggtcttcaaatttgcacggtcttcaagagtatcttgcacgtgcttgtatggt
ggagcatctaaaattattcagctgaaagagttagatcggggggcagacattgttgttgcc
acacctggtaggctcaatgatatacttgatatgaaaaaaattgactttaggcaagtttca
ctccttgtgcttgatgaggctgaccgaatgcttgatatgggttttgagcctcaaatccgt
aagattgtgaatgagattccaccacgtagacaaactctcatgtacactgcaacctggcct
aaagaagtgagaaaaattgctggcgatcttcttgttaatcctgttcaggttaacattgga
aatgtagatgagctcgccgcaaacaaatctatcacacagtatgttgaagttgtcccacaa
atggagaaacagaggcgtctagagcagatcctcagatcccaggaacgaggttctaagatc
ataatattttgttccacaaaaaagttatgtgatcagcttgcccggagtattggcagaagt
tttggggcggctgcaattcatggagacaagtctcaaggtgagagagactgggttttaggt
cagtttaggaatgggaagtctccaattttggttgctactgatgttgctgctcgtggtctt
gatattaaggatataagggttgtgatcaactatgatttccctaatggtgttgaagactat
gtacaccgaattggaagaactggacgggcaggtgctactggagtggcatatacctttttc
tctgagcaggattggaaacatgcaggcgatttgatcaaagttttggagggtgctaaccaa
cacgtgcttccagagttaaggcagattgcttcacgtgggccaccaagctttggaaaggat
aggggcgggatgactcggtttgactctggtggtggtgggcgctgggagactggtggtcgt
ggtggcatgagggatggtggtggctttggtcctcgtggaggcatgagggacggtggtggc
tttggtggaggttttggtggtcgcggtggcacaagggacggtggtagctttggcagtcgc
ggtggaatgagggatggagctggtggacaaggtgagagaggtggtgatttctttcctggt
agaggcaataggggtagaggatttggtcctccacgtgggggccctgttggttggggtagg
ggtgaccgtggtggtcctagtgatcggtacaacatggatggtcgcggacaagggcgtggt
cgtggacgatttgacaacagaagagatgttcagagaagtagagacagaagttacagtcgt
agccccgaaagagttcgaacatgggatattaacagaagcagcagtagaagtagaagtagg
agtaggagctggtctcgaggtcgcagtagaagccgcagctggtctcgaggtcgcagtcgc
agctatagccgtagtccacgacgaagtcatagccgtgaccgaagctatagccgcagccgc
agccccaaaaagaataataggcgtgtcaagtcaaaattttccgataagattgatatcgta
gcacctgaagcaggagcttctgatcctaaaatgttccctatatctgccaacacccaagag
agttctgttttgggaacagaacatctggagcagctacctgttgttggaagcactggccca
gataatccagaggctgtagtggacgttagtcatcaatcatctaatatttga
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