Pisum sativum (pea): 127079502
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Entry
127079502 CDS
T08598
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
psat
Pisum sativum (pea)
Pathway
psat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127079502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psat03019
]
127079502
03036 Chromosome and associated proteins [BR:
psat03036
]
127079502
Enzymes [BR:
psat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127079502
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127079502
mRNA degradation factors
5'-3' decay
Decapping complex
127079502
Chromosome and associated proteins [BR:
psat03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127079502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HSP70
Glyco_hydro_17
Helicase_C
CMS1
BATS
Motif
Other DBs
NCBI-GeneID:
127079502
NCBI-ProteinID:
XP_050875845
LinkDB
All DBs
Position
5:170749426..170750733
Genome browser
AA seq
375 aa
AA seq
DB search
MKEIAEAFLGKIIRDAVVTAPVYFDDAQRQATTDVDVIVGFNGARILSEPDATAENTEAY
VNNTIQRVQNDSGPPSQPNIQINTYIYELFKEDKRSGPISKNFGAECTRYESMEGFLKTE
TDAATQQYQQQGQSKAACHASTSSGSSNGYSAFCIPALKKIDQDNGVIQVVILAPTRELA
LQTSQVCKELAKHLQIQVLLTTGGTSLKDDIMRLYRLVHLLVGTPGRILDLAKKGVCILK
DYSMLVMDEVDKLLSPEFQPSIEQLIQFLPSSRQILMFSTTFPVTIKDFKDRYLRKPYII
NLMDELTLKGITRFYAFVEERQKVHCLNTLFSKLQINQSIIFYNSVNRIELLAKKITELG
YLCFYIHAKMQAGHY
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaatcgccgaagcattccttggtaagataattcgtgatgctgtcgttaccgcc
ccagtttatttcgatgatgctcagagacaggccaccacggatgtcgatgtcattgtcggt
ttcaatggtgctagaatcctcagtgaacctgatgctactgcagaaaatactgaggcctat
gtcaataatacgattcagcgggttcagaatgattctggtccacctagtcaaccaaacata
cagatcaatacatacatatatgaattatttaaagaagataagaggagtggacctatatct
aaaaattttggggcagagtgtaccaggtatgaaagcatggaaggatttttaaagacagaa
actgatgcagcaacgcagcaatatcagcagcaaggacaatcaaaagcagcttgccatgct
agcacatcatcaggctcttctaatggctactctgcattttgcattcctgcattgaaaaaa
attgatcaagataacggtgttattcaagttgttatactagctccaacacgagaattggct
ttgcaaacatctcaagtatgtaaagagcttgcaaaacatttgcaaattcaagttcttctc
acaacaggcggtacaagcctgaaagacgacattatgcgtttatatcgacttgtccatctg
ctagttggtactccgggaagaattttggatcttgcaaagaagggtgtctgcattctgaaa
gattattctatgcttgtgatggatgaggttgataaacttctctccccagagttccagcct
tcaattgagcagctgattcaatttcttccctcaagtcgtcaaatccttatgttttcaact
acatttcctgttactataaaggatttcaaagatagatatcttcgtaagccgtatatcatt
aatcttatggacgagctaactctgaagggtattacccgattttacgcatttgtggaggaa
aggcagaaagtccactgcctaaatactcttttctctaagctgcaaataaaccaatcaatc
atcttctacaattcggttaatcggattgaactacttgccaagaaaatcactgaactgggg
tatttatgtttctatattcatgcaaagatgcaagcaggccattattga
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