Lathyrus oleraceus (garden pea): 127083456
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Entry
127083456 CDS
T08598
Name
(RefSeq) uncharacterized protein LOC127083456 isoform X1
KO
K06100
symplekin
Organism
psat
Lathyrus oleraceus (garden pea)
Pathway
psat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127083456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psat03021
]
127083456
03019 Messenger RNA biogenesis [BR:
psat03019
]
127083456
Transcription machinery [BR:
psat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127083456
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
127083456
U7-dependent histone pre-mRNA processing factors
127083456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
127083456
NCBI-ProteinID:
XP_050879727
LinkDB
All DBs
Position
5:49112654..49133407
Genome browser
AA seq
1335 aa
AA seq
DB search
MAAPPTKDQVLSLLAAANNHGDVSVKTTSLKQAKDLLLSIDPSLAADLFPYLLDLQSSHE
SLVRKLLIQIIEEIGFRAAEHSPTLISSLLTLLRDSDVTVVKQSIISGINLFCSCFEEMI
LQFQQRGKVERWLEEIWMWMLKFKEAVFEIALEGGSIGIKLLALKFLEIFVLLFTSDISY
PEKSATQGVSQAVNISWLVDSHPVLDPTVLMTEANRTLGILFKLLQCAGNLPGCLTITVV
NCLAAIARKRPQHYGTILSALLDFDPNVQTVKGCHLVSIQYSLRTAFLGFLRCTYSPIIE
SRERLIRSLRAMSAGDAADQVIRQVDKMIKSGDRFARDARVGKDNQPSTQLPVSGELSRK
RPVPHDNEQLANGHEAIAKRIRSGPDSDFTSPAQINDSGRDLSSINGVSPNVPVLENELT
AVEQMIAVIGALIAEGERGAKSLEILISQIHPDLLADIVIANMKHLPKTPPTLARFENPS
VTRPVGSQVSQSQVIIASASTSSVQSLAVSAEAQFPSTTAISSATTSSPSETSNFSNLPA
DSKRDPRRDPRRLDPRRGAITPGGAAISVTDDTRATELESEDPVSIIKHASHHVSSTDDD
TQSNLTIKVKIEDRNSESPPVLGSDRVSPKTEALEGPGEHQIMEANASLNPGVSSTDSRD
EALSAVNLLDDTETNGTDSSSILELDQFSLDVQVSPKSEDTCLELPQLPPYIQLSQEQES
KVKHMAISHIIESYKHLHGEDSQQFCMPLLARLVAQIDNDSVITVMLQKHILEDHWRKGN
ELVLHVLYHLHSSMILDSAGNSSSFAVLYDNFLLGVAQTLLDSFPASDKSFSRLLGEVPF
LPESALKILEDLCYSDVIDHDGKIIRDIERVTQGLGAIWSLILGRPQNRQSCLAIALKCA
VHPQDEIRAKAIRLVTNKLFQLSYIAEDVVKFATKMLLSAVDHEVSIGVQSGPTEQRTEV
ENLEISSTSQVSEPENDPTRVAKPTIQSVSSISFSEAQRLISLFFALCTKKPSLLQIVFD
NYGQASRIVKQAFHRHIPNLVRALGQSYSELLHIISDPPKGSENLLTLVLQILTQDTTPS
SDLISTVKHLYQTKLRDVTILVPLLSSLTKTEVLPIFPQLVDLPLEKFQRALAHILQGSA
HTGPALTPVEVLVAIHGIVPEKDGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQT
PLPLLFMRTVIQAVDAFPALVDFVMEILSKLVTKQVWRMPKLWVGFLKCVYQTQPRSFHV
LLQLPPQQLESALNRHANLRGPLASYANQSSVKSSISRSTLVVLGLANETHVQQHLSASL
HHSEKGASVSGATLT
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atggccgcacctcccaccaaggaccaagtcctctctctcctcgccgctgctaataaccac
ggcgacgtctccgtcaaaaccacttccctaaaacaagccaaagaccttcttctttccatc
gacccctctctcgccgctgacctttttccttatctcctcgaccttcagtcttctcacgaa
agcctcgtccgcaaattgctcatacagataattgaggagattggttttagagcagctgaa
cattctcctacgctgatatcttcactgttaacacttctacgagatagcgatgtaactgtt
gtgaagcagtctattattagtggcatcaatttattctgtagttgttttgaggagatgatt
ttgcagtttcagcaacgtggtaaagttgagaggtggttagaagagatttggatgtggatg
cttaagttcaaggaggctgtttttgagattgctttggagggtgggtctattggaataaag
ttgttggcactgaaattcttggagatttttgtattactttttacatctgacatcagttat
cctgaaaaatcagccactcaaggagtaagccaagctgttaatatctcatggttggtggat
tctcaccctgttctcgatccaacggtgcttatgacagaggcaaataggacacttggcatt
ttatttaaattgttgcagtgtgctggcaatctccctggttgcttgacaattactgtcgtg
aattgtttagcagccattgcaaggaaaagaccacaacactatggtactatcctctcagct
ctgcttgattttgatccaaatgttcaaacagtaaaaggatgtcatcttgtcagtattcag
tactctttaagaacagcttttttgggttttctaagatgcacttattctccaataatagag
tcaagagaacgactgataaggagcctgcgagctatgagtgcaggggatgctgctgatcag
gtgattcggcaagtagacaaaatgattaaaagcggtgatcgctttgcccgtgatgctcga
gttggcaaggataaccaaccatcaactcagttgccagtttctggggaattatctaggaaa
agaccagttcctcatgataatgaacaattggccaatggtcacgaggccattgctaagcgg
attcgttctggtcctgactctgactttacttcacctgctcaaataaatgattctgggcga
gatcttagctccattaatggagtgtcacctaatgtccctgttctagaaaacgaactaact
gccgtggaacaaatgattgccgttattggtgctttgattgctgaaggagaaagaggcgcc
aaatctcttgaaatacttatttcacagattcatcctgatctgttggctgatattgtcata
gctaatatgaagcacttgcctaagacaccaccaacactagcaaggtttgagaacccatca
gtaactcgaccagtaggttcccaagtcagtcaatcgcaggttataatagcatctgcttca
acaagttctgtccaatccttggctgtttctgccgaagcacaattcccttcaactactgcc
atttcttctgccactacctcatcaccatccgagacatctaattttagcaaccttcctgcc
gattctaaacgtgatccacgccgggatccccgtcgtttggatccgcggcgtggagcaata
actcctggaggagcagctatctcagttacagatgataccagggccacagaattggaatct
gaggatcctgtatctattattaaacatgcttcacatcatgtttcaagtactgatgacgat
acccaatcaaatttaacaattaaagtaaaaattgaagataggaactccgaaagccctcca
gttctaggatctgatcgggttagtcccaaaacagaggctcttgaagggcctggagaacac
cagattatggaagcaaatgcttctttgaatcccggagtctcttccactgattcaagagac
gaagctctgagtgcagtaaatcttttggatgatactgaaacaaatgggacagattcatca
tctattttagagcttgatcagttttctcttgatgttcaagtgtcacccaaatcggaagat
acatgtctggagttgccacagcttccaccttacattcaactatcccaagaacaggaaagt
aaggtgaaacacatggccattagccatataattgagtcatacaaacatttgcacggggaa
gatagtcagcaattttgcatgccactacttgctagacttgtagctcagattgataacgat
agtgtgatcactgtgatgctgcaaaaacacattctggaagaccactggcgaaaggggaat
gagcttgttctgcatgttttgtatcatcttcactcctcgatgatattggattcagctgga
aactcttcatcttttgctgttttatatgataactttctcttaggagtggcccaaactctg
ttggactcttttccagcttcagataagtcttttagcagacttcttggtgaagttccattt
ctgcctgaatctgctttgaagattttggaggatctatgctattctgatgttattgatcat
gatggaaaaattatccgtgatattgagcgtgtaactcaaggccttggtgctatctggagt
ttaattttgggccgtccacaaaaccgtcaaagctgcttagcaatagcgttgaagtgtgct
gttcacccacaggacgagattcgagctaaagctattcggctggtgacaaacaagctcttt
cagcttagttacatagcagaagatgttgtgaaatttgcaacaaaaatgcttctctctgct
gtagatcatgaagtttcaattggagtacaatctggacctaccgaacaaagaacggaggtc
gaaaatcttgaaataagtagtacttcccaggtttcggagcctgaaaatgaccccactaga
gttgctaaaccaactattcaaagtgtttcatctatatcattttctgaagcacaacgcctg
atttctttattttttgctctatgtacaaagaaacccagtcttctacagattgtatttgat
aattatgggcaagcctcaagaattgtaaagcaggcttttcatcgccacattcctaatctt
gtgagagccctcgggcaatcttattctgaattgctccatatcatatctgatccaccaaaa
ggaagtgaaaatcttctgacactggtgctgcaaatattgactcaagacacaacaccatct
tctgatttgatatctacagttaaacatttatatcaaacaaaacttagagatgtcacaatt
cttgttccgctattgtcatcgctcaccaaaacagaggttttaccaattttcccacagctt
gttgaccttccattggaaaagtttcaaagggcacttgctcacatactacagggttcagct
catacaggcccagctttaacacctgtagaagtgttggttgcaatccatggaattgttcct
gagaaagatggtcttgcacttaaaaagataacagatgcttgctcggcttgttttgaacaa
cggacagtgttcactcagcaggttctggccaaggcattgaatcagatggttgatcaaaca
ccgttgcccctgctttttatgagaacagttattcaagccgttgatgctttccctgctttg
gttgattttgttatggagatactctcaaagcttgtgaccaaacaggtgtggcgtatgcca
aaactttgggttggtttcttaaaatgtgtatatcagacgcagccgcgttcttttcatgta
ttgttgcagttgccacctcaacaactggaaagtgcactcaacagacatgctaatctcaga
gggccccttgcttcttatgccaaccaatcatccgtaaaatcttcaattagtagatcaact
ttagttgttcttggtcttgcaaatgaaacacatgtgcagcaacatttatcagcatcattg
caccattctgagaagggtgcttcagttagtggggcaactctgacataa
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