Lathyrus oleraceus (garden pea): 127083542
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Entry
127083542 CDS
T08598
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
psat
Lathyrus oleraceus (garden pea)
Pathway
psat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127083542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psat03041
]
127083542
Spliceosome [BR:
psat03041
]
Complex B
Other components
Prp19-related factors
127083542
Complex C
127083542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH
zf-CCCH_3
RRM_YTH1
RRM_3
zf-CCCH_10
RRM_occluded
zf-CCCH_4
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
127083542
NCBI-ProteinID:
XP_050879807
LinkDB
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Position
5:248912583..248916959
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AA seq
498 aa
AA seq
DB search
MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSNDAIPKSDVNREYFAE
EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMNSLEVPEDESIKTLYIGGLDARVT
EQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQTAKLESDGSDQARQASVAHSGLLPRAVISQQQNQDQTQGMLYYNNPPPQQERSYYPSM
DPQRMGALIPSQDGPPGGPSGSGENKPPNSEKQQMQHYAHPMMPPPHGQYHHQYYPPYGG
YMQPVPPYQQYPPPPPYNAAMPPSQPPAANHPYQPPSQPPAASHPYQPPSQPGSSQSGSG
QAVSAPETGTSSSGSQQQ
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcacatcgtttgctcagagatcacgaagccgatggctgggaacgttccgacttcccc
atcatctgcgaatcctgtcttggtgacagcccttacgttcgaatgacaagggctgagtat
gataaagagtgcaagatttgtacaaggccttttactgtttttagatggagacctggtaga
gatgcaagatataagaaaagtgagatctgtcagacatgtagtaagttgaaaaatgtttgt
caagtatgccttttggatcttgaatatggacttccagttcaagtccgtgacacagctctc
agtatcagttccaatgatgctattccaaagagtgatgttaatagggagtattttgctgaa
gagcacgaccgcaaggctagagctggtatagattatgagtcctcttttggtaaagcacgc
ccaaatgatactattctgaagcttcaaagaacaacaccatattacaaaagaaaccgggca
catatttgcagtttctacataaggggtgagtgtaccaggggagctgagtgtccttacaga
catgagatgccagtaactggtgaactgtctcaacaaaatatcaaagatcgttattacgga
gtgaatgatccggtggctatgaagctacttggcaaggcaggagagatgaactcgttggag
gttcccgaggatgagagcattaaaacactttacattggtggacttgatgctagggttacc
gagcaggatttgcgggataacttttatgcccatggagaaattgagtccgtcaaaatggtt
cttcaaagggcttgtgcttttgtaacatatacaacaagagaaggtgcagaaaaggcagca
gaagaactctctaacaaactggttattaagggccttaggctaaaactgatgtggggcagg
cctcagacagccaaacttgagtctgatggttctgatcaagctaggcaggcctctgttgct
catagtgggttgttgcctcgagcagttatatcacagcagcagaaccaagaccagactcaa
ggaatgctgtactataacaatccacctcctcagcaggaaaggagctattacccttcaatg
gatcctcaaagaatgggtgctcttattccatctcaagatggtcctcctggtgggccttct
ggatcaggggagaacaaaccccccaattctgagaagcagcaaatgcaacattatgcccat
cctatgatgccacctccacatggccaatatcatcatcagtactatcctccatacggtggt
tacatgcagcctgttcccccttatcaacaatacccaccaccaccaccatacaatgctgca
atgcctccatcccaaccacctgctgctaatcatccctatcaacctccatcccaaccacct
gctgctagtcatccctatcaacctccatcccaaccggggtcttcacagtcagggtctgga
caagctgtgtctgcaccagaaactggaacatcatcatcgggttcacagcaacaataa
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