Lathyrus oleraceus (garden pea): 127084375
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Entry
127084375 CDS
T08598
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
psat
Lathyrus oleraceus (garden pea)
Pathway
psat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127084375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psat03041
]
127084375
03009 Ribosome biogenesis [BR:
psat03009
]
127084375
Enzymes [BR:
psat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127084375
Spliceosome [BR:
psat03041
]
Complex A
U1 snRNP components
U1 related factors
127084375
Complex B
127084375
Ribosome biogenesis [BR:
psat03009
]
Eukaryotic type
Pre-60S particles
Helicases
127084375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
PRAI
AAA_22
Terminase_6N
Cas3-like_C_2
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
127084375
NCBI-ProteinID:
XP_050880765
LinkDB
All DBs
Position
5:complement(325624006..325633120)
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AA seq
563 aa
AA seq
DB search
MSYVPPHLRNASSTAVATTTRPSASSGTLDHHHHNTNLAFSSSYPHSNSSSLANGSRRTS
AAPPPSRIVTVPDTVFPNWQPSERVSRMNPDQIEEVRLRLNLDVTVSSDSTAAPGPIESF
NDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMLQHC
LVQPPIRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESLKTAIVVGGTNIEKQRSELR
AGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLPEKHQT
LLFSATMPVEIEALAKEYLANPVQVKVGKVSSPTTNVSQTLVKVSESEKIDRLLDLLVEE
ASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQNEREAALQNFRSS
STSILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIATSFYTDRDM
FLVTNIRKAIADAESGNAVAFATGKVARRKEKEAAAAHKEANIASSRHLGLGAASINIED
KYRFMIAASNSRGEGAADSAWDD
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgttcctccacacttgagaaacgcgagctcaaccgcggtggctacaaccacc
agaccttcagcatcatccggaaccctagaccaccaccaccacaacaccaacctcgcattc
tcttcctcgtaccctcactccaactcttcttctctagccaatggttctcgtcgtacctct
gccgcacctccgccatctcggattgtcaccgtccctgacactgtcttccctaactggcaa
ccttctgaacgcgtttcccgcatgaaccccgaccagattgaagaggtccgcctacggctt
aatcttgacgttactgtttcatctgactctactgccgcacctggacctatagaatcgttt
aatgatatgtgtttgcatccaagtatcatgaaggatattgcttatcatgaatacaccagg
ccaacgtctatccaggcacaggccatgccaattgctctcagtggaagggatcttttgggt
tgtgcagaaactggtagtgggaagactgcagctttcaccattcctatgttacagcattgc
ttggtccaacctccaattcgacgtggagatggtcccctggcattagttttggctcctact
agagaacttgctcaacaaatagaaaaggaggtccaagcatttagcagatccctcgagtca
ttaaaaactgccatagttgttggtggaactaacattgaaaagcagaggtctgaactaaga
gcaggagttgaaatagcagtcgccacccctggaagattcattgaccacttacaacaaggc
aacacttctctctctagaatttcttatgttgttctagacgaggcagatagaatgcttgat
atggggtttgaaccacaaataagggagatcatgagaagtctacctgagaagcatcaaaca
ctgctgtttagtgcaacgatgcctgtggagatcgaagcattagcaaaggagtacttagct
aacccagttcaagttaaggtgggaaaagtgagcagcccaacaactaatgtttcacaaact
cttgtaaaggtgtctgaaagtgagaagattgaccgactcctagatttgcttgtagaagag
gcatcacaagctgaaaagtgtggtcatccatttccattgactattgtgtttgttgagaga
aagacaaggtgcgatgaagtggctgaagcattggttgctcaaggattatctgcagtttct
ctgcatggtggtcgcagtcagaatgaaagagaggctgcattacaaaattttcggagcagc
tccaccagcattttggttgccactgatgttgcatcacggggcttggatgtcacaggagtg
tcacacgtcatcaatcttgaccttccaaagaccacagaagattatatacaccggattgga
aggacagggcgtgcaggatcaactggcatagccacttcgttttacactgatcgtgacatg
ttccttgtgacaaatataaggaaagcaatagctgatgctgaatctgggaatgctgtggca
tttgctactggaaaggttgccagaaggaaggagaaagaagcagcagctgcacacaaggaa
gcaaatattgcttcatctagacaccttggattaggagctgcatcaattaacatcgaagat
aagtacagattcatgattgctgcctcaaacagtagaggagaaggcgcagcagatagtgca
tgggatgattga
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integrated database retrieval system
