Pisum sativum (pea): 127084636
Help
Entry
127084636 CDS
T08598
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
psat
Pisum sativum (pea)
Pathway
psat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127084636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psat03019
]
127084636
Enzymes [BR:
psat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127084636
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
127084636
mRNA degradation factors
3'-5' decay
Ski complex
127084636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
127084636
NCBI-ProteinID:
XP_050881082
LinkDB
All DBs
Position
5:354109478..354135984
Genome browser
AA seq
1335 aa
AA seq
DB search
MDPIQVSNELSFRVGFSGHSGHLRVEPLSTVERPKPQQSIPDFILPPAFPRETPESIQKF
IEETYLQPRLDPDEFAPEKVGRQWEFDWFDRAKVPLEPSVPRTVVVPIWEPPFRRPVKET
WKPKFEEVSVSDLSSGAVESGPLPRTSAKDFVRGSINNRPFRPGGLDDSQSLERTLPPGA
SNGEWVREILNGGPAQTIPPSLKQGLDLGALKPYPLSWNVYKDANTPKSSLDENMSGLSV
QFDDLFMKAWEEDAVGEQEEDSHLSEVETVTLEAEVDTTEVFSKASESGMSLDDILSVDS
EGSKLHLEGFSGEVGHKKKLTWAKLEASEEIADRFHELIPDMALEFPFELDAFQKEAIYY
LEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGL
LTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEEVII
MLPRHINIILLSATVPNTIEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFYSGELFKVCE
REIFLPQGLKAAKDASRKKHLTAGVSSGPKPGTSAGHDNARVQKRENTSRTKQHGTNFSG
TGSGYHNNNNGQSRWRAEASMWLMLINKLSKKSLLPVVIFCFSKNRCDKSADGMTGTDLT
SSSEKSEIRLFCDKAFSRLKGSDRNLPQVVRVQSLLRRGIGVHHAGLLPIVKEVVEMLFC
RGVIKVLFSTETFAMGVNAPARTVVFDTVRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKI
GTVILMCRDELPEESDLKHVIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAE
FHAQKKLPEMQQLLKRKLNQPTKVIECIKGQPTIEEYYDLYFEAEKYNSQISEAVLLSPN
AQSFLNIGRVVVIKSESAQDHLLAVIVKTPPTNSKLYIVFVIRPDMPFPVENASGGGKSQ
DKSSTFDQGFFVMPKSRRGLLDEYTTSVSARKGRGVVNIKLPHRGSACGMSYEVREVDIK
EFLCICSSKIKVDQVGLLEDISSSVYAKTVQLLQDLKSDGNKYPPALDPVKDLKLREVGL
VETYRKWTRLLEKMSQNQCNGCIKLAEHLKLAKEIKAHKEEVTELQFQMSDEALQQMPDF
QGRIDVLKEIGCIDEDLVVQMKGRVACEMNSGEELICTECLFENQLDELDPEEVVALMSA
FVFQQKNASESSLTSRLSEAKNRLYKTAIRLGELQAQFNLPISPEEYAQENLKFGLVEVV
YEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREFKNSAAIMGNSALCKKMEIASNAI
KRDIVFAASLYITGV
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atggatccgatccaagtatccaacgagctctctttccgcgtcggattttccggccacagc
ggccatctcagggtggagccgctgtccacagtggaacgtcccaagccgcagcagtccatt
cccgatttcattctgccacctgcctttcctagggagacacctgaatctatacagaagttt
atagaagagacttatctgcagccgagattggatccggatgaatttgcaccagaaaaagtt
gggaggcagtgggaatttgattggtttgacagggctaaagttcctcttgagccatcagtg
ccgcggactgtggtagttccaatatgggaacctccgtttcgacgtccagtgaaggaaacc
tggaagccaaaatttgaggaggtgagtgtatctgatctatcatcaggagctgtagaatct
ggaccattgccacgcacttctgcgaaggattttgttaggggaagcatcaacaatcgccct
tttcgtccagggggtttggatgattcacaaagcctagaaagaactcttccacctggtgct
tctaatggtgaatgggtgcgtgaaattttaaatggtggccctgcgcagacaataccacct
agcctaaagcaaggactggaccttggtgcactcaagccgtatccattgtcatggaatgtt
tacaaggatgccaatacgccaaagagctcattagatgaaaatatgagtggattgtctgta
cagtttgacgacttattcatgaaggcttgggaagaggatgctgttggagaacaagaagaa
gatagtcatttatcagaagtggagactgttacgttggaagctgaagttgatacaaccgaa
gtattcagcaaagctagtgagagtggaatgtcacttgatgatattttatcagttgactca
gaaggatcaaaactgcatttggagggatttagtggcgaagtcggacacaagaaaaagcta
acttgggctaagcttgaagccagcgaagaaattgctgatcgctttcatgaacttattcct
gacatggcactagagtttcctttcgaattggatgcatttcagaaggaggctatttattat
cttgaaaagggggaatctgtttttgtggctgcgcacacatctgccggaaagacagtagtt
gctgaatatgcatttgccctagcatcaaaacactgcactagagctgtgtatactgctcca
attaaaaccattagcaatcagaaatatagagatttctgtgggaagtttgatgtcgggctt
cttactggtgacgtaagcttgaggccagaggcttcttgtctcatcatgaccacagaaatt
ttaagatcaatgctctatcgcggtgcagatataattcgagacattgaatgggttatattt
gacgaggtgcactatgtcaatgatgttgaaagaggtgtagtttgggaagaagtaattatc
atgcttccaagacacatcaatatcatcctcctttctgccacggttcccaataccattgaa
tttgccgattggattggcaggacaaaacaaaaggaaatccgggttacagggacaacaaaa
agacccgtcccattggagcactgccttttttactctggagaactattcaaagtttgtgag
agggaaatatttctacctcagggtttaaaagctgctaaagatgcttcaagaaaaaaacat
ttgactgctggtgttagttctggtccaaagccagggacttcagcaggtcatgacaatgct
cgtgttcaaaagcgagaaaatacatctcgaacgaagcagcatggaactaatttctctgga
actggcagcggctatcataataataacaatggccaaagcagatggagagcagaagcttca
atgtggttgatgcttatcaacaaactctccaaaaaatctttacttcctgtggttatattt
tgtttttctaaaaatcgatgtgataaatctgctgatggcatgactggaactgacctcact
agtagctcagaaaaaagtgagatccgtcttttctgtgacaaagcattttcaagactgaaa
ggatctgacagaaatttaccacaggttgttcgagtccaaagtcttcttcggagagggata
ggagttcatcatgctggccttcttccaattgtaaaggaagttgttgaaatgctgttttgc
cgtggtgttatcaaggtcttgttttcaacagagacatttgcaatgggagtcaatgcacct
gctagaacggtagtctttgataccgtaaggaagtttgatgggaaggaatttaggcagtta
ctaccaggagaatacactcaaatggcaggtcgtgctggcagaagagggcttgataagatt
ggtactgtcattttgatgtgtcgtgacgaactcccagaagagagtgatttaaaacatgtt
attgttggaagtgcaactcgtcttgaatctcaatttcggctaacctatattatgatcttg
catcttcttcgagttgaagaattgaaggtagaggacatgcttaaaagaagttttgctgaa
tttcatgctcagaaaaaacttccggaaatgcaacagcttttgaagcgaaagcttaatcag
cctacaaaggttattgagtgtataaagggtcagccaactattgaagagtactatgattta
tatttcgaagccgagaaatacaacagccagatatcagaggcagttttgctgtcacccaat
gctcaatcatttctcaatattggaagagttgttgtaataaaatcagaatcagcccaggac
cacttgcttgcggtgattgtgaaaactcctcctacaaatagtaaactgtacatagttttt
gtgattagacctgacatgccattcccagtggaaaatgcttcaggtggtgggaaatcacag
gacaaaagcagtacatttgaccaaggtttttttgtaatgccaaaatcaagacgtggtctt
ttagatgaatatactacatctgtttctgctcgcaaaggaagaggtgtcgtcaacatcaaa
ttgccccatcgaggttctgcttgtggaatgagctatgaagtccgtgaagtcgatattaaa
gaatttctatgcatatgcagtagcaaaattaaggttgaccaagttggacttcttgaagat
attagcagttctgtttacgcaaagactgttcagttgctccaggatttgaaatcagatgga
aataagtatcctccagctctggatcctgtgaaagatctaaagttgagagaggtgggactt
gtggaaacataccgtaagtggactagattattggagaagatgtcccagaatcagtgtaat
gggtgtataaaattggcagaacacctcaagttagcaaaggagataaaagcgcacaaagaa
gaagtcactgaactccagtttcaaatgtcggatgaagcacttcaacagatgccagacttt
cagggccggatagatgttctaaaggaaattggatgcattgatgaagaccttgttgttcaa
atgaaaggccgagttgcttgtgagatgaattctggggaggaattgatatgtacggagtgc
ttgtttgagaaccagctcgatgaactggatccagaagaagtagtggcgttaatgtctgct
tttgtgttccagcagaaaaatgcatctgagtcttccctcacaagcaggctatctgaagcg
aaaaataggttgtataaaacagctataagactaggagagcttcaagcacagtttaatctc
ccaataagccctgaggagtatgcccaagaaaatctaaaatttggtcttgttgaagtggtt
tatgaatgggcaaagggtactccgtttgctgacatatgtgagcttactgatgttcctgaa
ggcatgatagtaaggaccattgtcaggttggatgagacatgtcgagagttcaaaaattct
gcagcgattatgggtaattctgccctctgcaaaaaaatggaaattgcttctaatgcaata
aagcgagacattgtgtttgcagctagcttgtatattaccggcgtatga
DBGET
integrated database retrieval system
