Lathyrus oleraceus (garden pea): 127085230
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Entry
127085230 CDS
T08598
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
psat
Lathyrus oleraceus (garden pea)
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psat03009
]
127085230
03036 Chromosome and associated proteins [BR:
psat03036
]
127085230
Enzymes [BR:
psat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127085230
Ribosome biogenesis [BR:
psat03009
]
Eukaryotic type
Pre-60S particles
Helicases
127085230
Chromosome and associated proteins [BR:
psat03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
127085230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
127085230
NCBI-ProteinID:
XP_050881733
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All DBs
Position
5:428884177..428889590
Genome browser
AA seq
559 aa
AA seq
DB search
MASSILRRSSSIFSRCFFAAVTSIEPLLSRRNSHALFSAAYGKGDRLFHAKSGPLNFHSS
LVSRGAQLAVDYDDDAPHNEGDEGLEIAELGISNEIVNALAKKGITKLFPIQKAVLEPAM
QGRDMIGRARTGTGKTLAFGIPILDKIIKFNAKHGKRRDPLALVLAPTRELARQVEKEFN
EAAPNLETVCLYGGMPIQQQIGQLGGGVDIVVGTPGRVIDLLKRGSLKLKDVNYLVLDEA
DQMLQVGFQEAVEIILQKLPSKRQTVMFSATMPSWIKTITRKYLNNPLTIDLVGDSDQKL
ADGISMYSIASNAYAKAGILAPLINEHAKGGKCIVFTQTKRDADRLSHIMSKSVKCEALH
GDISQTQRERTLTGFRNNYFNVLVATDVASRGLDIPNVDLVIHYELPNSSEIFVHRTGRT
GRAGKKGTAILVHTENQSRAVQSIARDVGCTFTELPKIAGESGSEDMFGSTSGSRYGSSG
GRDRRSGGSGIGGSSGFGRTSNVKSSRFSSSGSSQSEGGFGGFSGKTDKYGGGGFGNSGR
SSGFGNFGLGKSGSYGGRN
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggcaagctctattctcagaagatcttcttccatattctcacggtgtttcttcgccgcc
gtaacttccattgaaccacttctgtcacgtcgcaacagccacgccttgttctccgccgcc
tacggcaaaggagacaggctgtttcacgccaaatctggaccgttgaatttccactcgtcg
ctggtttctcgtggtgcgcaacttgctgtggattacgacgacgacgcaccacacaatgaa
ggggacgaaggactggagatcgcggagcttgggatttctaacgagatcgtgaatgctctt
gcaaagaaagggatcacgaagctcttccctattcagaaagctgtgctggaacctgctatg
caagggagggatatgattggtcgagctagaacaggaactgggaaaactcttgctttcggg
atacctatcttggataagattattaagtttaacgctaagcatgggaaaagaagagatcct
ttggctttggtgttggcaccgaccagggaacttgcacggcaggttgaaaaggaattcaat
gaggctgcacctaacttggaaacagtttgtctttatgggggtatgcctattcagcaacaa
atcggccaacttggtggtggcgtagatattgtagttggcacacctggacgtgttattgat
cttctcaaaaggggttccctcaaattgaaggatgttaactatttagttcttgatgaagct
gatcagatgcttcaagtgggatttcaagaagcggtggagattattttgcagaagttgcct
tcaaagcgtcaaactgttatgttctccgcaacaatgccttcttggataaagactattaca
cgcaaatacctgaacaatcccttaaccattgatcttgttggagattctgatcagaagttg
gcagatggaatttcaatgtactctattgcatctaacgcctatgctaaagcaggaattcta
gcacctcttataaatgaacatgctaaaggaggaaagtgtattgttttcactcaaaccaaa
cgtgatgctgatcgactatcacatataatgtcaaaaagcgttaaatgtgaagctttacat
ggagatatttcacaaactcagagagaaagaactcttactggctttagaaacaactatttc
aatgttttagtggcaaccgatgttgcttcccgtgggctcgatataccaaatgttgatctt
gtaatacattatgaacttccaaattcttcagagatatttgttcatcgaactggacgaacg
ggacgtgctgggaagaaagggactgctattcttgtccatacagaaaatcaatccagagct
gtacaatcaattgcacgagatgttggttgtacattcacagagttacctaagatcgctggt
gagagtggatcagaagacatgtttggtagcacgagtgggagtcgatatggctcttcagga
ggtagggatcgtcgatcaggcggctcgggtattggtggtagttctggatttggccgaact
agcaatgttaaatccagtcgctttagcagctctggttcaagtcagtcagaaggtggcttt
gggggattttctggtaaaacagataaatatggtggtggaggatttggcaattcaggtcgt
tctagtggctttggaaattttggattgggtaaatctgggtcatatgggggaagaaattga
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