Pisum sativum (pea): 127085375
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Entry
127085375 CDS
T08598
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
psat
Pisum sativum (pea)
Pathway
psat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127085375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psat03019
]
127085375
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
127085375
mRNA cycle factors
Common to processing body (P body) and stress granule
127085375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
127085375
NCBI-ProteinID:
XP_050881850
LinkDB
All DBs
Position
5:complement(451094385..451101192)
Genome browser
AA seq
966 aa
AA seq
DB search
MMLAKMDNMSAPSSQERAQCLYEKNLELENKRRRSAQVRVPSDPNAWQQMRENYEAIILE
DHAFSEQHNIEFALWQLHYKRIEEFRAYFNAALSSTNSNPSQGGKGPVRPDRITKIRLQF
KTFLSEATGFYHDLIIKIRAKYGLPLGYFEDSDNRIAMEKDGKKYADMKIGLVSCHRCLI
YLGDLARYKGIYGEGDSINREFTAASSYYLQAASLLPSSGNPHHQLALVASYSGDELVTI
YRYFRSLAVDSPFITARENLIVAFEKNRQSFSQLPGDTKVLAVKESSGRPTGKARGKVEA
KLATKAASARIKEASSIQETYKCFCTRFVRLNGVLFTRTSLETFPEVLAVVNAGLRKLLS
SGQDEELSFGTENELVIVRIVCIIVFTIYNVNKESEGQTYAEIVQRAVLLQNAFAAAFEL
MGYIIERCTELRDPSSSYLLPGVLVFVEWLACYPDLAKGNDVDENQATIRSKFWSHCISL
LNRLLLVEPMSILDEEETCFNNMSRYEEGETENRLALFEDFELRGFVPLLPAQTILDFSR
KHSLGNDGEKERKARVKRILAAGKALANVIRVDQKVIYFDSKAKNFTFGVEPQTSDDFVL
ATSYSGMLNTENFLQENPGDKSTVEVVQSNQDRYIEEDEEVIVFKPVVSEARADVVVSSW
APHEGLGPSLKAFEGDLKFHESSTSNPLDNINHQTLPVSVSGMMPQNLQPVQTSRWIEEE
IFLGNNFEALRLFENGHVMKPGLQEAVDISNRVAFPIPVQQSVAADTNGVFQGLPKSSES
VIPSKVDAIASSGVITDNLYGMTTPALQASLRKSPVSRPARHIGPPPGFSPFPSKQGSEY
SVSDSISGNPIMDDYGWLDGYHLDSSTTGLSSNSPLAYAQSNSHQVSNNGYSGTVSFPFP
GKKFPSVPLQVEKQNGWHEYQSNEHLKSHTDQQLQPQQQLTNGNQQFSPLPEQFQGQSIW
TGRYLV
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atgatgttagcaaagatggataacatgtctgctccctcatcacaggagcgtgcacagtgc
ctttatgaaaagaaccttgaattggagaataagcgtcgtagatctgctcaagtgcgggtc
ccatccgatccaaatgcttggcaacagatgcgtgagaattatgaagcaataattcttgag
gatcatgctttctccgagcagcacaatattgaatttgcactttggcagttgcattataag
cggattgaggagtttagggcatacttcaatgcagccctgtcttctactaactcaaaccca
tcgcagggaggaaaaggccctgtgcggcctgatcgaataactaaaataaggcttcagttt
aagactttcctttcagaggcaacaggattttatcacgatcttatcattaaaatcagggca
aagtatgggcttccacttggttactttgaggattcagacaatcggattgcaatggagaaa
gatggaaagaaatatgctgatatgaagataggtttagtgtcttgtcatcgttgtctgata
tacttgggagatcttgctcgttataaaggaatttatggtgaaggtgactcaataaaccgt
gagttcacagcagcctctagctactacttgcaagctgcatctcttttgccttcaagtggg
aatccccatcatcagcttgcattagtagcttcatattctggagatgagctggtgactatt
tatcggtactttcgcagtctggctgtggatagtccttttataactgcaagagaaaacttg
atagttgcatttgagaagaaccgtcagagtttctctcagctacctggtgatactaaagtt
cttgctgtcaaggaatcttcaggaagaccaactggcaaagcaagaggaaaagttgaagca
aaacttgcaacaaaggcagctagtgctagaatcaaagaagcatcaagtatacaagaaact
tataaatgcttttgcactcgctttgtacgcctaaatggagtcttgttcactcgtacaagt
ctcgagaccttccccgaagttcttgccgttgttaacgctggcctgcgcaaacttctttct
tcagggcaagatgaggagctcagttttggcactgagaatgaacttgtcattgtccgaatt
gtctgcatcatagtatttacaatttataacgtgaataaggaatctgaaggtcaaacttat
gcagaaattgtacagcgtgctgttcttcttcagaatgcatttgctgcagcttttgaattg
atgggttacataatagagagatgtacagagctgcgtgatccatcttctagttatcttcta
cccggagttttggtttttgttgagtggctggcttgttatccagatctagctaaaggcaat
gatgtggatgagaatcaggctactatcagatcaaaattttggagtcattgtatatccctt
ttgaatagactgcttttagttgagcctatgtccattcttgatgaggaggaaacttgcttt
aataacatgagcaggtatgaagaaggggaaactgaaaaccgacttgctttgtttgaggac
tttgagttaaggggatttgttccactgcttcctgcacaaactatcttggacttttctagg
aagcattctcttggaaatgatggtgaaaaggaaaggaaagctcgggttaaaaggatttta
gctgcagggaaggctttagcaaatgttattagggttgaccagaaagtgatatattttgat
tcgaaggcgaagaattttacatttggtgttgagcctcaaacctcagatgattttgttctt
gctacctcctattcgggcatgctcaatacagaaaactttctgcaagaaaatccaggagac
aaatcaacggtggaagttgttcaatcaaatcaagatcggtatatagaggaagatgaagaa
gttattgttttcaagcctgtagtgtctgaggctcgagctgatgtggttgtctcatcatgg
gctccccatgaggggttggggccttctctaaaagcatttgaaggggatttaaaatttcat
gaaagttctacttccaaccctctcgataatataaaccatcaaactttacctgtttctgtt
agcggtatgatgcctcaaaacctccaaccagtgcaaacatcaaggtggattgaggaggaa
atttttcttggcaacaattttgaagctcttcgcttatttgagaatgggcatgtaatgaaa
cctggccttcaagaagctgtagacatctcaaaccgtgtagcatttcctattcctgttcaa
caatctgtcgctgctgatactaatggtgtgtttcagggtcttccaaaatcttcagaatct
gtgataccatccaaagttgatgctattgcatctagtggagtaattacggataatttatat
gggatgaccacaccagccttgcaagctagtttgagaaaatctccagtcagtcgacctgct
aggcacataggacctccaccgggctttagtccctttccttccaaacaaggtagtgaatac
tctgtttcagattcaataagtgggaatccaattatggatgattatggttggttagatgga
tatcatttggattcatcaactactggtttaagctccaacagtcctctggcttacgcacaa
tcaaattctcatcaagtcagtaacaatggctatagtgggacggttagctttcccttccct
ggaaaaaaatttccatctgtgcctcttcaggtggagaaacaaaatggttggcatgagtat
caatcaaatgagcatttaaaatcacatactgatcagcagctgcaacctcaacagcagctc
acaaatggaaaccagcagttttctcctctgcctgagcaatttcaaggacagtcaatttgg
acaggtcgttacttggtgtga
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