Pisum sativum (pea): 127087114
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Entry
127087114 CDS
T08598
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
psat
Pisum sativum (pea)
Pathway
psat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127087114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psat03019
]
127087114
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127087114
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127087114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
127087114
NCBI-ProteinID:
XP_050883919
LinkDB
All DBs
Position
5:617670482..617677422
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AA seq
661 aa
AA seq
DB search
MSGLLNSSLNGSASNLPDGAGRSFTTSFSSQSGAASPIYQHTGGIQGLHNMHGSFNIPNM
PSTLTSRNSSLNSMPSGAVQQPTSSLSSGRFSSNNLPAALSQLSHGSSHGHSGVNSRGGI
SVVGNPGFNSNTNGVAGSIPGILPTSAAIGNRNAVPGLGVSPILGNAGPRITSSMGNMVA
GGNIGRISSGGLSIPGLASRLNLNGSSGSGGLGVQGQNRLMSGVLPQGSPQVISMLGNSY
PSAGGPLSQSHIQAVHHLNSMGMLNDLNSSDSSPFDLNDFPQLSSRPSSAGGPQGQLGSL
RKQGLSPIVQQNQEFSIQNEDFPALPGYKGGNGEFTMDMHQKEQLHDNAMSMMQSQHFSM
GRSAGFSLGGSYSSHRTQQQQQHTPSASNSGVSFSSVNNQDLHLHGSDVFPSPNSTYHSQ
TSGPPGIGLRPLNSPNNVSGTGSYDQLIQQYQQHQNQSQFRLQQMSAVNQTFRDHGMKSM
QTAQPAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWSEEP
AKGDPEFSVLQCYYAKPPPALHQGYFAKFTLDTLFYIFYSMPKDEAQLYAANELYKRGWF
YHKEHRMWYIRVPNMEPLVKTNTYERGSYHCFDPSTFETVRRDNFVLHYEMVEKRPSLPQ
H
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgtccggtttacttaattcttctctgaacggatctgcttcaaatcttccagacggtgct
gggcgttcttttactacatcattctctagtcagtctggtgcagcctcgccaatttatcag
cacactggaggtattcaggggttgcacaacatgcacgggagctttaacattcctaacatg
cctagtacacttacatcaagaaactcatcattaaacagcatgccatctggagcagttcag
caacctacatcaagtctttctagtggaagattttcatcaaataatctacctgctgctctg
tcacagctatctcatggaagctctcacggacattcaggagtcaacagtagaggaggtata
agtgttgtaggaaatcctggatttaatagtaacacaaatggagttgctggttctattcct
gggattcttccaacttctgctgcaattggtaaccgtaatgctgttccaggattgggagta
tccccaattttgggaaatgcaggtccgaggataacaagttcgatggggaacatggttgct
gggggaaacattgggaggataagctctggaggattgtccattcctggtcttgcttcacgt
ctaaatttaaatggaagcagcggatctggcggcttaggcgtgcaaggacaaaatcgattg
atgagtggcgtgcttcctcaaggatctcctcaggtaatttcaatgctaggaaattcttat
ccaagtgctggaggtccactttcacaaagccatattcaagcagtacatcacttgaactct
atgggaatgttgaatgacttgaattccagtgacagttcaccctttgacctcaatgacttc
cctcaactatcaagtcgtcctagttctgctggagggcctcaaggacagttgggctcttta
cgaaaacagggtcttagtcctattgtacaacaaaaccaagagtttagcattcaaaatgaa
gacttcccagctttaccaggatacaaaggtggtaatggagagtttactatggatatgcat
cagaaagaacaacttcatgacaatgctatgtcaatgatgcagtcacagcatttctccatg
gggaggtctgccggtttcagcttgggaggatcttattcatcacatcgtactcaacagcaa
cagcagcatactccttctgccagtaacagtggtgtctctttttcatctgtgaacaatcaa
gatcttcatctgcatgggtcggacgtttttccgtctccaaactctacgtatcattcacag
accagcggacctcctggcattggattaaggccactaaattctccaaataatgtttctggt
acgggttcatatgaccagctcatccagcagtatcaacagcaccagaatcagtcccaattt
cgccttcagcaaatgtcagctgtaaatcagacctttagggatcatggcatgaagtctatg
caaactgcacaaccagctcctgatccatttggtttgcttggcttgttaagtgtaatcagg
atgagtgatcctgatctgacatctcttgctcttggaattgatcttacaacactcggatta
aatttgaattcatcagaaaatcttcacaagacttttgggtctccttggtcagaggaacca
gctaagggtgatccagagtttagtgtgcttcaatgttattatgctaaaccacctcctgcc
ctacaccaagggtattttgcaaagtttactttggatacattgttttacatattttacagc
atgcctaaagacgaagcacaactatatgcagcgaatgaactgtacaaacgaggctggttt
tatcataaagagcatcgcatgtggtatataagagtgcctaacatggagccgcttgtcaaa
acaaacacatatgagagaggatcttaccactgttttgatccaagcacttttgaaactgtc
cggagggataattttgttcttcattatgaaatggtggaaaagagaccgtctttaccgcaa
cattaa
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