Lathyrus oleraceus (garden pea): 127087322
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Entry
127087322 CDS
T08598
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
psat
Lathyrus oleraceus (garden pea)
Pathway
psat03013
Nucleocytoplasmic transport
psat03015
mRNA surveillance pathway
psat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127087322
09122 Translation
03013 Nucleocytoplasmic transport
127087322
03015 mRNA surveillance pathway
127087322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psat03019
]
127087322
03041 Spliceosome [BR:
psat03041
]
127087322
Enzymes [BR:
psat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127087322
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127087322
Spliceosome [BR:
psat03041
]
Complex C
Other components
EJC/TREX
127087322
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127087322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
127087322
NCBI-ProteinID:
XP_050884160
LinkDB
All DBs
Position
5:complement(82977912..82982703)
Genome browser
AA seq
432 aa
AA seq
DB search
MSESTVQALETFFSNQSFFGLLSTQDLNIHLKVIHLLQYCSGELTCFGNGIKLKASEWFI
LLTVGSFGPFFFASSSVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQV
SALVLCHTRELAYQICHEFERFSTYLTDLKVAVFYGGVNIKVHKDLLKNECPQIVVGTPG
RILALARDKDLSLKNVRHFVLDECDKMLESLDMRKDVQNIFKLTPHDKQVMMFSATLSKE
IRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFV
KSVSRAAELDRLLIECNFPSICIHSGMSQEERLKRYRGFKEGHTRILVATDLVGRGIDIE
RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEIDIKQL
PEQIDTSTYMPS
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaatccacagttcaggctttagagactttcttctcaaaccagagcttcttcggg
ctattgtcgactcaggatttgaacatccatctgaaggtaatacatctattacaatactgt
tctggagaactaacatgctttggtaacggtatcaaattaaaagcgtcagaatggtttatt
ttacttaccgttggttccttcgggccttttttctttgcttcatcatcagtgcaacatgag
tgcatacctcaagcaatcctaggaatggacgtaatttgtcaagcgaaatctggaatggga
aagactgctgtctttgttctctcaactttgcagcagattgatcctgttccaggtcaagta
tctgcactcgttctgtgtcatacaagagaactagcttatcagatatgccatgagtttgag
aggtttagtacctacttaaccgatctgaaggttgctgtcttttatggtggggttaatatc
aaagttcacaaggatctgttgaaaaatgagtgccctcaaattgttgtcggaacgcctgga
agaatactagcattggctagggataaagatctgtctttgaagaatgttagacattttgtt
ttagatgaatgtgataagatgctcgaatcactagacatgaggaaagatgttcaaaacatt
ttcaaattgactccccatgataagcaagttatgatgttttcagcaacactcagcaaggaa
atccgcccagtctgcaaaaagtttatgcaagatcctatggaaatttatgttgatgatgaa
gccaagttaacccttcatggacttgttcagcactacatcaaattgaaagaggaggagaaa
aaccgcaaattgaatgatcttcttgatgctctagacttcaaccaagttgttatctttgtg
aaaagtgttagtagagctgctgagctggacagactactcatagaatgcaattttccatct
atatgcattcactctggcatgtcccaggaagaaaggttaaagcgttatagaggtttcaag
gaggggcatacaaggattcttgttgctacagatttggttggtagagggattgacattgaa
cgtgtcaatattgttataaactatgacatgcctgattctgcagacacttacttgcacagg
gttggccgtgctggaagatttggtaccaaaggccttgcaatcacatttgtttcatgttct
actgatgttgatgttctcaacaatgttcagtcaaggtttgaaatagatataaagcagctt
cctgagcagattgatacttctacctacatgccatcgtag
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