Pisum sativum (pea): 127090955
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Entry
127090955 CDS
T08598
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
psat
Pisum sativum (pea)
Pathway
psat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127090955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psat03041
]
127090955
03009 Ribosome biogenesis [BR:
psat03009
]
127090955
Enzymes [BR:
psat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127090955
Spliceosome [BR:
psat03041
]
Complex A
U2 snRNP components
U2 related factors
127090955
Complex B
127090955
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
127090955
Ribosome biogenesis [BR:
psat03009
]
Eukaryotic type
90S particles
Helicases
127090955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
T2SSE
AAA_7
FtsK_SpoIIIE
Flavi_DEAD
AAA_30
AAA_29
AAA_33
Motif
Other DBs
NCBI-GeneID:
127090955
NCBI-ProteinID:
XP_050885389
LinkDB
All DBs
Position
6:complement(354167360..354171470)
Genome browser
AA seq
721 aa
AA seq
DB search
MGTERKRKVSLFDVVDDAAAKMVKTNGGLIGNSLINHWNGKPYSQRYYEILEKRKTLPVW
HQKDDFLQVLKDNQTLILVGETGSGKTTQIPQFVLEAVDLETPDKRKKMMIACTQPRRVA
AMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVI
ILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRLH
PVEIFYTQDPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKISKEVANMGD
QVGPVKAVPLYSTLPPAMQQKIFDAAPPPVKEGGPPGRKIVVSTNIAETSLTIDGIVYVI
DPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQ
TYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTK
LGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFIRPREAQKAADEAKARF
GHVDGDHLTLLNVYHAYKQNNEDASWCYDNFVNNRALKSADNVRQQLVRIMARFNLKLCS
TDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYN
EYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLEKLYKKREKEKDEARNR
K
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgggtacagagaggaaaagaaaggtgagtttgttcgacgtcgtcgacgacgctgctgct
aagatggtgaaaaccaacggcggcttaatcggcaacagcctcattaaccactggaacgga
aagccttactctcaaaggtactatgagattttggagaagaggaaaacacttcccgtttgg
caccagaaagatgatttcttgcaggttttgaaggataaccagactttgattctcgttggt
gaaactggtagtggcaaaacaacacagatccctcagtttgttttggaagctgttgattta
gagacaccggataaacgcaagaagatgatgattgcatgtactcagcctcgtagagtggct
gctatgtctgtttcccgccgtgtggctgaagagatggatgttactatcggggaagaggtt
ggttatagcatccgatttgaagattgtagtagtgcaaggacagttttgaagtatctaacc
gatggtatgcttttgagagaggcaatgacggatccacttttggaacgatacaaagtaatt
attcttgatgaggcacatgaaaggactttggctacagatgtgttatttggccttcttaag
gaagttcttaaaaacagacctgacttgaagttggttgttatgagtgctacacttgaagct
gaaaagtttcagggatattttttcggagccccgctaatgaaagttcctggaaggcttcat
ccagttgagattttttatactcaagatccagaaagagattacttggaggctgctattagg
acagtggtgcagattcacatgtgtgaacctgctggagacatacttgtttttcttactgga
gaggaagaaatagaagacgcatgccgcaaaatatccaaagaagttgcaaatatgggggat
caggtgggccctgtgaaagcggtgccattgtattctactcttccgccagctatgcagcag
aagatttttgatgcagctcctcctccagttaaggagggaggccctcctggaaggaagatt
gtggtatcaacaaacatagcagaaacttccttgacaattgacggtatagtctatgttatt
gaccctggatttgctaagcagaaggtttataatcctcgagttcgtgtcgagtctttgttg
gtgtcaccaatatcaaaggctagtgcacatcagagatctgggcgtgctggaagaactcag
ccagggaaatgctttagactttataccgagaaaagtttcaataatgatcttcagccgcaa
acctatcctgaaattttgagatcaaatctagctaacacagttcttacactgaagaaattg
ggtatagatgatttagtgcattttgatttcatggaccctcctgcccctgaaacgttaatg
cgggctttggaagtgttgaattacttgggtgcattggatgatgagggtaacttaacaaag
ctgggtgagattatgagtgagtttccgttggaccctcagatgtcaaagatgcttgttgtt
agtcctgagttcaactgttcaaatgagattctttcaatttctgccatgttgtcagtaccc
aattgctttatccggcctagggaggcacaaaaagctgcggatgaagcgaaagctaggttt
ggacacgttgatggagatcatctcacactcttgaatgtataccatgcctacaagcaaaac
aatgaggatgcatcttggtgctacgacaactttgtcaataacagagcgctcaaatcagct
gataatgttcgacagcagctagtgcgtatcatggctcggtttaacctgaagttatgcagc
actgacttcaatagtcgtgactattacgtcaacattagaaaggcaatgctagcaggatat
ttcatgcaggtggctcatcttgaacgtacaggacactatttaaccgtgaaagacaatcag
gtggtacacttgcatccatcaaattgccttgatcacaagcccgaatgggttatctataat
gaatatgttcttaccagtcggaattttatacgtactgtgacggatatacgcggtgaatgg
ctagtagatatagcgccacattactatgatttgtctaattttccacaatgtgaggccaag
cgtgttcttgaaaagctgtacaagaaaagagagaaggaaaaggatgaagccaggaatcgg
aaatga
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