Pisum sativum (pea): 127091032
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Entry
127091032 CDS
T08598
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
psat
Pisum sativum (pea)
Pathway
psat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127091032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psat03021
]
127091032
03019 Messenger RNA biogenesis [BR:
psat03019
]
127091032
Transcription machinery [BR:
psat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127091032
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
127091032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
127091032
NCBI-ProteinID:
XP_050885493
LinkDB
All DBs
Position
6:126123355..126130037
Genome browser
AA seq
971 aa
AA seq
DB search
MENSRRPFVRSKEPILKRPRLMKDLERSPNSSAPVFPQRQQQVTSASRFRQNEREEENVD
GGYQPQPLPFQELVAQYKSALAELTFNSKLIITNLTIIAGENRAAEKAVAATISANILEV
PSEQKLPSLYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVDPPVRQSMKHLFGTWKGV
FPPQTLQAIDKELGFTPAVNGSSSASASAALRSDSQTHQPPHSIHVNPKYFERQRVQESS
RSNQHTHRDPFDDPVPEKSISASYGGSEHGSNLSRNMGVGIGRTDGSITELGHRTLYNKT
AAGVSGSISGQRNGVGLKHSFSNTEATTISDAQHQPTRNITGIKRNVMSSSWKNSEEEEY
MWDEMNTGLTSHGVRNNLGNDAWTADDENLDAEDNHHQIRNVFGTNVDREMTNRSQATQK
KQFRHHPSLSWKLQEQQSIDELNKELGHSDVCMSMSGSLLGNANSSAARMGNRAFLPNAR
TGGHQFHSVGSESTSGQSPLRQRSPSPPSIDHSHLMENFDKQDHPYTRKTSHFLGGLHSQ
YIKDSSSTLSPNIQIGDLQRSSQVKDLQCPLPSASFQPRYRQQLSSSHTEVTEKPPLANV
SLARETSEQPATSHTEAASVKSRLFSNKPITSSLPSLLGSRPSQSGGSLVSANASPSSSA
LPKRPKRKAGQTIRTSTLPPASSNVSSASAQTSGPTNKTSNPLSNLLSSLVAKGLISTET
ETLAEVPSEVVTRLEDHCDSFSTSSSMPVASLSGSAAVPVPSNKDELDDTAKTPMSLSES
TSTDIRNVIGFEFKPNVIRKLHPSVIAGLFDDFPHHCSICGLKLKFQEQFSRHLEWHATR
ERKQSGLTTPSRWYLKSTDWVAGQAECSSENEFTDSVDSQDKETDEGQEDAMVLADENQC
LCVLCGELFEDVYCQENSEWMFKGAVYVTGSDSDTEMGIKDTCSGRGPIIHTKCLSDNSL
LSVLKMVRLII
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcacgaagaccgtttgttagatcgaaagaaccaattttgaagcgacccaga
ttaatgaaagatctggaacgttctcctaattcgagtgctccagtgtttccacagagacaa
cagcaagttacttctgcttcacggttcagacagaatgaaagagaagaggagaatgtcgac
ggtggttaccagcctcagccgttgccgtttcaggagcttgtggctcagtataagagtgcg
cttgcagagctcactttcaattcgaaactgataattaccaacctgactataattgcaggc
gaaaatcgagctgctgagaaggccgttgctgccactataagtgctaacattctagaggtt
cctagtgaacaaaagctgccatctctttatctcttagacagtattgttaagaatattggg
cgggattacataaaatactttgctgccaaactacccgaggtgttctgcaaggcatacaga
caggttgatcctcctgtccgtcaaagtatgaaacacctttttggaacttggaaaggagtc
tttcctcctcagacccttcaggctatagacaaagaactgggcttcactccagcagtcaat
ggttcgtcttcagcatctgcatctgctgcactcaggagtgattcccagacacatcaacca
cctcatagtatacatgtgaatcccaagtattttgaacgacagcgtgttcaggagtccagc
aggagtaatcagcacactcatagagacccattcgacgatcctgttccagaaaagagcatc
agtgcatcctatggaggcagtgaacatggttccaatctttcaaggaatatgggcgtgggt
attggcagaactgatggcagcataaccgagttaggacacagaactttgtacaacaaaact
gctgctggtgtttcagggtccatatctgggcaaagaaatggtgttggcctcaagcatagt
ttttcaaatactgaagctactactatttcggatgcacaacatcagccaacacgaaacata
actggcataaagagaaatgtgatgtcaagtagctggaaaaattctgaggaagaggagtac
atgtgggatgagatgaacactggattgactagtcatggtgtccgtaacaacttgggaaac
gacgcttggactgctgatgatgagaatttggacgctgaagataaccaccaccaaatcaga
aatgtttttgggacaaatgttgatagagaaatgaccaatagatctcaagccactcaaaag
aaacaatttcggcatcatccgtcattatcatggaaattgcaggagcagcaatcaattgat
gaattgaataaggaactgggtcactcggatgtatgtatgtcaatgtctggttccttacta
ggcaatgcaaattcttctgccgccaggatgggaaaccgtgctttcctgcccaatgcaaga
actggaggacatcaatttcattctgtgggatctgagtccacttctgggcagtcacctttg
cgacaacgctctccctcgccaccaagtattgaccactctcatctaatggaaaattttgat
aagcaagaccatccttacactcgaaaaacatctcattttttgggaggtctgcatagccaa
tatattaaagattcttcatccaccctttctcctaatattcagattggagacttgcaaaga
tcatcacaggtaaaagacttgcagtgtccattaccttcagcgagttttcagccaagatat
cggcaacaactgagctcttctcacactgaagtaactgagaagccacccttagccaatgtt
tctctagctcgagaaacctcagagcagccagccacaagtcatacagaagctgcaagtgtg
aagagtagactattctccaacaagccaattactagtagtcttccatctctattagggtct
cggccttctcagtcaggtggttctttagtgtctgcaaatgcttctccatcttcatctgct
ttaccaaaaagacctaaaagaaaggccggacaaacaataaggacatctactctaccacca
gcttcctctaatgtcagcagtgcctcagcgcagacatctggtcctacaaataaaacctca
aatccactttcaaaccttttaagctcattagttgcaaagggtttgatatccacagaaact
gagacactggctgaggtgccatctgaggtggtgactcgattggaagatcactgcgacagc
tttagtaccagtagctctatgcctgttgcttcattgtctggttctgcagctgtccccgtt
ccttcaaacaaagatgagttagatgatactgcaaaaacacctatgtccttatctgaatca
accagcacagatattagaaatgtcattggctttgagtttaagcctaatgtaatcagaaag
ttgcatccatctgtaattgctggattatttgatgattttccacatcattgcagcatttgt
ggccttaagctcaaattccaagaacagtttagtagacacttggagtggcacgccacaaga
gaaagaaaacaaagtggtttaactacaccatcaagatggtatctgaagtcaactgactgg
gttgccggccaagctgaatgttcatctgaaaatgagtttactgattctgtagattcacaa
gacaaggaaacagatgaaggtcaagaggatgcaatggttctagcagatgaaaaccaatgc
ttatgcgtgttgtgtggtgagctatttgaagatgtttactgtcaggaaaatagcgagtgg
atgttcaaaggggctgtttacgtgactggctctgatagcgatactgagatgggaatcaaa
gatacatgttctggaaggggtcccatcattcacacaaaatgcttatcagataactcgtta
ttgagtgtcctcaagatggtaaggcttattatttga
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