Lathyrus oleraceus (garden pea): 127092543
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Entry
127092543 CDS
T08598
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
psat
Lathyrus oleraceus (garden pea)
Pathway
psat03013
Nucleocytoplasmic transport
psat03015
mRNA surveillance pathway
psat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127092543
09122 Translation
03013 Nucleocytoplasmic transport
127092543
03015 mRNA surveillance pathway
127092543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psat03019
]
127092543
03041 Spliceosome [BR:
psat03041
]
127092543
Enzymes [BR:
psat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127092543
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127092543
Spliceosome [BR:
psat03041
]
Complex C
Other components
EJC/TREX
127092543
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127092543
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
127092543
NCBI-ProteinID:
XP_050887399
LinkDB
All DBs
Position
6:28693081..28699420
Genome browser
AA seq
427 aa
AA seq
DB search
MGETKDDVYEDELLDYEEEDEKVPDSAGTKVNGESGKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPIPGQVSALIL
CHTRELAYQICHEFERFSTYLTDLKVAVFYGGVNIKVHKDLLKNECPQIVVGTPGRILAL
SRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEVDIKQLPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaccaaggacgatgtttacgaggatgagcttctggactacgaagaggaagat
gaaaaagttcctgattccgctggaactaaagttaacggtgaatccggaaagaagggctat
gttgggatccacagttcaggtttcagagactttcttctaaagccagagcttcttcgggct
attgtggattcaggatttgagcatccttctgaagtacaacatgaatgcatacctcaagca
atcttgggaatggatgttttatgccaagcaaaatctggaatgggaaaaactgctgttttt
gttttatcaactttgcagcagattgatcctattccaggccaagtttctgctcttattctg
tgtcatacaagggaattagcttaccagatatgccatgagtttgaaaggttcagcacctac
ttgactgatctcaaggttgctgtcttctatggtggtgtcaacattaaagttcacaaggat
ctgttgaaaaatgaatgtcctcaaattgttgttggtacacctggaagaatactagcattg
tccagggataaggacctttctttgaagaatgtcaggcatttcattttagatgaatgtgat
aagatgctggaatcacttgacatgaggaaagatgtgcaagacattttcaagttgactccc
cacgataagcaagttatgatgttttctgcaacgctcagcaaggaaatccgcccagtctgc
aaaaaatttatgcaagatcccatggaaatttatgttgacgacgaagcaaaattgaccctt
catggtcttgttcagcactacatcaaattgaaggaggaggagaaaaaccggaagttgaat
gatcttcttgatgcactggacttcaatcaagttgtgatttttgtgaaaagtgttagtcga
gcagctgagctggacaagctgcttgtggaatgcaactttccatctatatgcattcattct
ggaatgtcccaggaagaaaggttgaagcgttataaaggttttaaggaggggcataccagg
attcttgtagcaactgatttggttggcagaggaattgacattgaacgtgtgaatattgtg
ataaactatgacatgcctgactctgcagacacatacttacacagagttggccgagctgga
aggtttggcaccaaaggccttgcaattacatttgtttcatgttcatccgatgttgatgtt
ctcaataatgttcagtcccggtttgaggtggatataaaacagcttccagagcagattgat
acatctacatacatgccatcgtaa
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