Lathyrus oleraceus (garden pea): 127094711
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Entry
127094711 CDS
T08598
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 2-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
psat
Lathyrus oleraceus (garden pea)
Pathway
psat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127094711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psat03019
]
127094711
Enzymes [BR:
psat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
127094711
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127094711
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127094711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
PAH_ZNF598
IG_AIR9
ANCHR-like_BBOX
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
127094711
NCBI-ProteinID:
XP_050889462
LinkDB
All DBs
Position
6:194053584..194059933
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AA seq
576 aa
AA seq
DB search
MLAVVRLHLPSDIPIVGIELSPYVLIRRLDSTVTADDIPETSPVDGHFLRYKWYRVQSDK
NVAVCSIHPSEPATLQCLACLKPQIPVAKSYHCSPKCFRDAWPHHRALHERAANVVSGNE
DKFGRFNNSVSSANLTIGYTPPMYPAGIKHGDETWFEVGRTKNYTPTADDIGHALKFECS
IANEVTKLRVGQPNTLLTNRVITAPSPTPRQLIHVDGMGHLDLDRRGSFTVMSYKVLSET
CASNDLYNYCPPWALSWPYRRQNLLREIVGYRADIICLQEVQNDHYDDFFSPELDKHGYY
GIFKRKTTEVPGGKTIDGCATFYRRDKFAHVKKYEVEFNKAAQSLTEAVIPTTQKKIALN
RLVKDNVALIMVLEMKVNNQIADTLAKKQLVCVANTHVHVQQDLKDVKLWQVHTLLKGLE
KIAASADIPMLVCGDFNSVPGSAPHALLALGKVDPSHHDLTVDPLNILHPHNKLVHQLPL
VSAYTAFARTVGVAFEQHKRRLDSRTNEPLFTSVTRDFVGTLDYIFYSADLLTVASLLEL
LDEESLRKDTALPSPGWSSDHIALLAEFRCQNKSWH
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgctggccgtggtgcgactgcacctcccttctgatattcccattgttggcatcgaactc
tcgccgtatgttcttattcgccgccttgattcaactgttactgccgatgatattcctgaa
acctcccctgtagacggccatttcttgcgctacaagtggtatcgtgtacaaagtgataaa
aatgttgctgtatgtagcatacatccatctgagccggccacattacagtgtctagcctgt
cttaagccccaaatacctgttgctaaaagttaccactgcagcccaaagtgttttcgagat
gcatggccgcaccatcgtgccttacatgagcgtgctgcaaatgtagttagtggaaatgag
gacaaatttgggcgttttaataattctgtctcaagtgctaacttgacgattggatataca
cctcctatgtatccagcaggtatcaaacatggcgatgaaacttggttcgaagttggacga
actaagaattataccccaactgccgatgacattggtcatgctcttaagtttgaatgttct
atagctaatgaagtgacaaaattacgtgtggggcaacctaacactttattaactaatcgg
gtcattactgctccttcacctactccacgtcagctgatacatgttgatgggatggggcat
ttagatctagataggcggggaagttttactgttatgtcatacaaggtattgtccgagaca
tgtgcctcaaatgatctgtataattactgccctccatgggcactttcttggccatatcgc
aggcaaaatttattacgggaaattgttggttaccgtgcagacattatttgccttcaggag
gttcaaaatgaccattatgacgattttttttcccctgaattagacaaacatggctattac
ggtattttcaagagaaaaacaaccgaggtacccggtgggaaaacaattgatggttgtgca
acattttatcgcagagacaaatttgctcatgtgaagaaatatgaggttgagttcaataag
gctgcacagtctttaacagaagctgtcattccaaccactcagaagaaaattgccttgaat
cgactggtcaaggataatgttgcactaataatggttctagaaatgaaagttaacaatcaa
atagctgacactcttgcgaaaaaacaacttgtttgtgtggcaaatacacatgtgcatgtc
cagcaagatttaaaagatgtcaaactttggcaggtgcatactctcttaaaagggttggaa
aaaatagctgcaagtgcagacattccaatgttggtttgtggagactttaattcagttcca
ggaagtgctcctcatgcacttcttgcactggggaaggtagacccatcacatcatgattta
acagttgacccactcaatattttacaccctcataacaagctggttcatcagttgccactg
gtcagtgcgtacaccgcttttgcaagaacagtcggtgttgcatttgagcagcataaaagg
agactggatagcagaacaaatgaacctttattcacaagtgtgactagagattttgttggc
actctagactacatattttactcagcggatttattgactgtagcgtcgttattggagtta
ctggatgaggagagtttgaggaaggacactgcacttccttcacccggatggtcctcagat
catattgcactcttagctgagtttcgctgccagaataagtcttggcattaa
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