Pisum sativum (pea): 127100941
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Entry
127100941 CDS
T08598
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
psat
Pisum sativum (pea)
Pathway
psat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127100941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psat03019
]
127100941
03041 Spliceosome [BR:
psat03041
]
127100941
03009 Ribosome biogenesis [BR:
psat03009
]
127100941
03016 Transfer RNA biogenesis [BR:
psat03016
]
127100941
Enzymes [BR:
psat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127100941
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
127100941
Spliceosome [BR:
psat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127100941
Complex C
U4/U6.U5 tri-SnRNP related factors
127100941
Ribosome biogenesis [BR:
psat03009
]
Eukaryotic type
Pre-60S particles
Helicases
127100941
Transfer RNA biogenesis [BR:
psat03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
127100941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
DUF7204
DUF7579
Motif
Other DBs
NCBI-GeneID:
127100941
NCBI-ProteinID:
XP_050894206
LinkDB
All DBs
Position
7:35822652..35833538
Genome browser
AA seq
976 aa
AA seq
DB search
MEQEPATLGKRRDSETTDAGDTSSKPKKPRSLERTCVHEVAVPSNYISTKDESLHGTLSN
PLHNSTMAKTYSFTLDPFQQVSIACLERNESVLVSAHTSAGKTAIAEYAVAMAFRDKQRV
IYTSPLKALSNQKYRELSQEFKDVGLMTGDVTISPNATCLVMTTEILRGMLYRGSEVLKE
VAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNIHKQPCH
VVYTDFRPTPLQHYVFPNGGNGLYLVVDENEQFREDNFVKLQDTFSKQKVGDGFRGGKSN
GRHGKGGSAGAGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMAMSKLDFNTQEEKDT
VEHVFRNAVLCLNEEDRSLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKAL
FATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGICIIMI
DEEMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQFQYEKA
LPDMGKRVSMLEQEVALLDAAGEAEVSEYHKLKLEYALLEKKMMSQIIRPEMILYFLVPG
RLIKVREGGTDWGWGVVVNVVKKPVGGYIVDTLLHCSPSSSENSTRSKPCPPRLGEKGEM
HVVPVQLPLISALSKLMIHVPPDLRPLEARQSILLAVQELGNRFPQGLPKLNPVKDMDVR
DSEIVELVNQIEELEKKLLGHPMHKVQDVDQIKSFERKAEANHEIQHLKAKMRDSQLQKF
RDELKNRSRVLKKLGHIDADSVVQLKGRAACLVDTGDELLVTELMFNGTFNDLDHHQVAA
LASCFIPVDKSSEQIQLRSELARPLQQLQDNARRIAEIQHECKLEVNVNEYVESTVKPFL
MDVIYSWSKGSSFADVTQMTDIFEGSIIRAARRLDEFLNQLRAAAEAVGEVDLEKKFAAA
SESLRRGIIFANSLYL
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atggagcaagaaccagcaacactcggaaaacgaagggattccgaaaccaccgacgccggc
gacacttcttcaaaaccaaagaaaccccgcagtttagaacgcacttgcgtccacgaagtt
gcagttccaagcaattacatctcaacaaaggacgaatcacttcacggaacactctccaat
cctctccacaacagcaccatggcaaaaacctactccttcacactcgaccccttccaacaa
gtatcaatcgcgtgcctcgaacggaacgagtccgttttggtttcagctcacacttcagct
ggaaagactgcgattgcggagtacgcagtcgcaatggcgtttagagataaacagagagtt
atctatacttctccgcttaaagcgcttagtaaccagaaatacagagagctcagtcaagaa
tttaaagacgtagggttgatgaccggtgatgttacgatctctccgaatgcgacgtgtctt
gttatgacgacggagattcttaggggaatgctgtatcgtggttctgaggttttgaaggaa
gttgcttgggttatatttgatgaaattcattatatgaaggatcgtgaaagaggtgttgtt
tgggaagaaagtataatctttttgccgcctgctattaaaatggtgtttctttcggctact
atgtcgaatgctacggagtttgcggagtggatttgtaatatacataagcaaccctgtcat
gttgtgtatactgattttagaccgactccgttgcagcattatgtttttcccaatggtggg
aatggattgtatttggttgtcgatgagaatgaacagtttagggaggataattttgttaag
ctgcaggatactttttctaagcagaaagttggtgatgggtttaggggtggtaaatctaat
ggcagacatgggaaaggtggttctgctggtgctggttctgacatatacaaaattgttaag
atgatcatggaaaggaaattccaacctgttatcatctttagcttcagtaggagagagtgt
gagcagcatgcaatggctatgtctaagcttgacttcaacacccaagaggaaaaggataca
gtggagcatgtttttaggaatgcagttctctgtttgaatgaagaagaccggagcttacct
gctatcgagctgatgttaccactacttcagcgaggaattgctgtccaccattctggcctt
cttcctgtcatcaaagaattggttgagcttcttttccaggaaggtcttgtaaaggccctc
tttgctactgagacatttgcaatgggtttaaatatgccggcaaaaactgttgtattcact
gctgttaagaagtgggatggtgatagtcaccgttatattggctctggtgaatatatacag
atgagtggaagggccgggcgtcgtggcaaagatgagcgtgggatttgtatcataatgatt
gatgaggagatggaaatgaataccctcaaagacatggttctgggtaaacccgctccttta
gttagtacatttaggcttagttactactcaattttaaatttgatgagccgtgcagaaggc
caattcactgccgaacacgtgataagaaactcatttcatcaatttcaatatgagaaggcc
ttacctgatatgggaaaaagggtatctatgctggagcaggaagtagccttgcttgatgct
gcaggggaggctgaagtatctgaatatcataagctgaaattagaatatgctcttcttgag
aagaagatgatgtcgcaaataataagaccggaaatgattctttattttcttgtccctggt
cgattgattaaagtaagagaaggcgggacagattggggctggggtgttgtagtcaatgtt
gttaagaaacctgttggtggttatatagttgacactttacttcattgttcacctagttca
agcgaaaacagtacacggtcaaaaccatgtccaccgcgccttggagagaaaggtgaaatg
catgtggtccctgttcaattaccattaatctctgcgcttagtaaactaatgatacacgta
cctcctgatctccggcccttggaagctcggcaaagcatactccttgctgttcaggagctg
ggcaatcgttttcctcaaggtcttccaaagcttaaccctgttaaggacatggatgtacga
gattcagagatagttgaacttgtcaatcaaatagaagagcttgagaaaaagttgcttggt
catcctatgcataaggttcaagatgtagatcaaattaagagctttgagaggaaagctgaa
gcgaatcatgaaattcaacacctgaaagcaaaaatgcgagactcccagctgcaaaaattt
cgggatgaacttaaaaatcgctctcgagtcttaaagaagcttggtcatattgacgctgat
agtgtagttcaattgaaaggaagggcagcctgcttggttgacacaggagatgaactcctt
gtcactgaattaatgtttaatggcacttttaatgatctggaccatcatcaagttgctgct
cttgcaagttgttttataccagtagataaatcaagtgagcagatacaactgagatcagag
cttgcgagacctctacagcagcttcaagacaatgcaagaaggatagcagagatacaacac
gaatgcaaattggaagtaaatgtgaatgagtatgtcgaatcaacagtaaagccattcttg
atggatgtaatatactcttggtctaagggatctagttttgctgatgttactcaaatgact
gacatcttcgagggcagtatcattagggctgctagaaggcttgatgagtttttgaatcag
ttgcgtgctgctgctgaagcagttggagaagttgacttggagaagaaatttgctgcagca
agtgaaagccttcgacgtggtattatttttgcaaattctctgtatctgtga
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