Lathyrus oleraceus (garden pea): 127101023
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Entry
127101023 CDS
T08598
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
psat
Lathyrus oleraceus (garden pea)
Pathway
psat03013
Nucleocytoplasmic transport
psat03015
mRNA surveillance pathway
psat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127101023
09122 Translation
03013 Nucleocytoplasmic transport
127101023
03015 mRNA surveillance pathway
127101023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psat03019
]
127101023
03041 Spliceosome [BR:
psat03041
]
127101023
Enzymes [BR:
psat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127101023
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127101023
Spliceosome [BR:
psat03041
]
Complex C
Other components
EJC/TREX
127101023
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127101023
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
127101023
NCBI-ProteinID:
XP_050894288
LinkDB
All DBs
Position
7:545986398..545993529
Genome browser
AA seq
426 aa
AA seq
DB search
MGELKETEVYEEELIDYEEEDEKALDSAKPTTETVKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALVLC
HTRELAYQICHEVERFSTYLSDIKVAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALT
RDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLQEPEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAGDSEVLNQVQSRFEVDIKELPEQIDT
STYMPN
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaattgaaagaaactgaggtttacgaggaagagctcatcgactatgaagaggag
gatgaaaaggcccttgattctgctaaacctactaccgaaaccgtcaagaagggttacgtt
gggatccatagttcgggatttcgagacttcctgttgaaaccagagcttcttcgagccata
gtagattcgggatttgagcatccttcagaagtgcaacacgaatgcatccctcaagcaatt
ttgggaatggatgtcatctgccaagcaaaatctggcatgggaaagactgctgtttttgtt
ctgtcaacacttcagcaaattgatcctgttcctggtcaagttgcagcacttgttctttgc
cacacaagagaactagcttatcagatttgccacgaagtggagaggttcagcacatatctt
tcagatataaaagttgctgttttctatggtggtgtcaacatcaaggttcacaaagaattg
ctcaagaacgagtgtccccacattgttgttggaacacctgggaggattcttgccctgact
agagataaggaccttggtttgaagaatgtgaggcattttatacttgatgagtgtgacaag
atgctggaatcactagacatgagaagagacgtgcaagagattttcaaattgactcctcat
gataaacaagtgatgatgttttcagctacactcagcaaagagattcgacctgtttgcaag
aagtttatgcaagatcccatggaaatatatgtagatgacgaggccaaattgactcttcat
ggtcttgttcagcactacatcaaattacaagagccagagaaaaatcgtaagctgaatgac
cttcttgatgctcttgacttcaaccaagttgtcatttttgtcaaaagtgttagcagagcg
gcagaattgaacaagttgcttgttgagtgcaacttcccatcaatatgcatacattctgga
atgtcacaggaagaaagattgaagcgttacaagggcttcaaagaggggaagcaaaggatt
cttgtggcaacagatttagtaggaagggggattgatatagaacgtgttaatatagtcatc
aactatgacatgcctgattctgctgacacctatcttcacagggttggaagagctggtaga
tttggcaccaaggggcttgcaattacctttgtgtcttctgctggtgactctgaagttctt
aatcaggtgcaatctaggttcgaggttgatataaaagagcttcctgaacaaattgacacc
tccacatacatgcctaattga
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