Lathyrus oleraceus (garden pea): 127101609
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Entry
127101609 CDS
T08598
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
psat
Lathyrus oleraceus (garden pea)
Pathway
psat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127101609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psat03019
]
127101609
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127101609
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127101609
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
zf-C2H2_CASZ1_1
Motif
Other DBs
NCBI-GeneID:
127101609
NCBI-ProteinID:
XP_050895021
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All DBs
Position
7:complement(491986414..491994537)
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AA seq
658 aa
AA seq
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MSGFLNSSVNGSASNLSDGAGRSYATSFSSQSGAASPIFHHTGAIQGMHNIHGSFNVPNM
PGTLPPRNSTLNNVPSGGVQQQAGSLSSGRFTSNNLPIALSQLSHGSSYGHSGVTNRGGT
SVVGNPGYSNSTNEFGGSIPGFPASIGNRSAVPGLGVSPISGSVDPRITSSLGNMVGGGN
IGRTGGLSVPGLASRLNLSANSGSGGLGMQGQNRLMSSVLPQGSPQVLSMSGNSYPSAGG
PLSQSHVHGVSNLNTMRMLNDVNSNDSSPFDLNDFPQLTSRPGSAGGSQGQLGSLRNQGL
GVSPIGQQNHEFSIQNEDFPALPGFKGVSADYDMDMHQKEQLHDNAMPMMQSQHFSQMGR
SAGFSLGGTYSSHRPQPQQHNPSVSSGSVSFSSVNNQDLLHQHGSDVFPSSRSAYQSQTN
GPPGIGLRPLNSSNTVSGMGSSYDQLIQQYQQQKNQSQFRLQMPSLNQSFRDQGMMSMQA
AQSPDPYGLLGLLSVIRMNDLDLASLALGIDLTTLGLNLNSSENLHKTFKSPWAEESAKG
DPEFNVPQCYYAEQPPALHLGYFSKFSVETLFYIFYSMPKDKAQLCAAIELNKRGWFYHK
EYRLWFTRAPNMEPLVKTNTYERGTYHCFDPSSFETVRKDNVVLHYDMLENRPHLPQH
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggttttcttaattcttctgtgaacggatctgcttcaaatctttcggatggtgct
ggacggtcttatgccacatctttctctagtcagtctggtgcagcctccccaatttttcat
catactggtgctattcaagggatgcataatattcatgggagctttaatgttcccaacatg
cctggtactctcccaccaagaaactccacattaaataatgttccgtctgggggtgttcaa
caacaagcaggaagcctttctagtggaagatttacatccaacaatctccctattgcatta
tcacagctatctcatggaagttcctatggacattcaggagtcaccaatagaggaggtaca
agtgttgtaggaaaccctggatatagtaatagtacaaatgaatttggtggttctattcct
gggtttcctgcatctattggtaatcgaagcgctgttccaggattaggagtatccccaatt
tcaggaagtgtagatcctcgaatcaccagttctttaggaaacatggttggtggggggaat
attggaaggactggaggattgtctgttcccggtcttgcttctcgtctaaacttgagtgca
aacagtggatctggtggtttaggcatgcaaggacaaaatcgattgatgagtagcgtgctt
ccacaaggatctccgcaggtgctttcaatgtcagggaattcttatcctagtgctggaggc
ccgctttcccaaagccatgttcacggagtaagtaacttgaacactatgaggatgttgaat
gatgtaaattccaatgatagttcaccttttgacctcaatgatttccctcaactgacaagt
cgtcctggatctgctggaggatctcaaggacagttgggttctttacggaatcagggtctt
ggtgtcagtcctattggtcaacaaaaccatgaatttagcattcaaaatgaagatttccct
gcattaccaggattcaaaggtgttagtgcagattatgatatggatatgcaccagaaagaa
caacttcatgacaatgctatgccaatgatgcaatctcagcatttctctcagatggggagg
tctgctggtttcagcttggggggaacatattcatcccatcgtccccaaccgcaacagcat
aatccttcagtcagcagtggcagtgtctcgttctcatcggtaaataaccaggatcttctc
catcaacatggatcagatgtttttccgtcttctcgttctgcctatcagtcacagacaaat
ggacctcctggcattggattaaggcctttaaattcttcaaatacagtttctggtatgggt
tcatcatacgaccaactcatccagcaatatcaacagcaaaagaatcaatcccagtttcgt
cttcaaatgccatctctaaatcagtcttttagggatcagggcatgatgtctatgcaagct
gcacaatcaccagatccatatggtttgcttggcctgttaagtgtaatcaggatgaacgat
cttgacttggcatctcttgctcttggaattgatcttactacacttggcttaaatcttaat
tcatcagaaaatcttcataagacttttaagtctccatgggcagaagaatcagctaagggt
gatccagagtttaatgtgccacagtgttattatgcggaacaaccacctgctttacaccta
ggttatttttcaaagttttcagtggaaacattgttttacatattttacagtatgccgaaa
gacaaagcacaattatgtgctgcaattgagcttaacaaaagaggctggttttaccacaaa
gagtatcgactgtggtttacaagagcacccaacatggagccgctggtgaaaacaaacaca
tacgagagaggaacttatcactgttttgatccaagttcatttgaaacggtccgcaaggat
aatgttgttcttcattatgatatgctggaaaatagacctcatctacctcagcattaa
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