Lathyrus oleraceus (garden pea): 127103233
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Entry
127103233 CDS
T08598
Name
(RefSeq) ATP-dependent RNA helicase uap56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
psat
Lathyrus oleraceus (garden pea)
Pathway
psat03013
Nucleocytoplasmic transport
psat03015
mRNA surveillance pathway
psat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127103233
09122 Translation
03013 Nucleocytoplasmic transport
127103233
03015 mRNA surveillance pathway
127103233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psat03019
]
127103233
03041 Spliceosome [BR:
psat03041
]
127103233
Enzymes [BR:
psat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127103233
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127103233
Spliceosome [BR:
psat03041
]
Complex C
Other components
EJC/TREX
127103233
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127103233
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
Cas3-like_C_2
RPC3_helical
HisKA
Motif
Other DBs
NCBI-GeneID:
127103233
NCBI-ProteinID:
XP_050896456
LinkDB
All DBs
Position
7:complement(246487735..246488586)
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AA seq
283 aa
AA seq
DB search
MAYVMDQKAMLLQQSTWQNNVRMNNLVEQIHGPLSSIQSLSKILSTQTKKSQISHDIVED
ILVLGDRSRDVLHQLQDAVYVTKTNIMRHNEEAIKEMNHMLAESEKTQLLDSSLVDKLLV
ECNFPYICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVTNYDMPDSA
DTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPPLS
SGNPPQAVVAVAATSSPNETVGSITQTDQGKSSCSDQYPEISL
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atggcatatgttatggatcagaaagcaatgttacttcagcaatcaacatggcaaaataat
gtcaggatgaataatttggttgagcaaatccatggtccactttcaagcattcaatccttg
agtaaaatcctgtctacacaaacaaagaaaagtcagatttcacatgacattgttgaggat
atcttggtgctaggtgatcgctcgagggatgttctccatcaacttcaggatgctgtatat
gtgacgaagactaatattatgcgccacaatgaagaagcaatcaaggaaatgaatcacatg
cttgctgaatcagaaaaaactcaattgttagatagttctctagtggacaagctgcttgtg
gaatgcaactttccatatatatgcattcattctggaatgtcccaggaagaaaggttgaag
cgttataaaggttttaaggagggacataccaggattcttgtagcaaccgatttggttggc
agaggaattgacattgaacgcgtgaatattgtgacaaactatgacatgcctgactctgca
gacacatacttacacagagttggccgagctggaaggtttggcaccaaaggccttgcaatt
acatttgtttcatgttcatccgatgttgacgttctcaataatgttcagtcccggtttgag
gtggatataaaacagcttcctgagcagattgatacatctacatacatgccaccactttca
tccggaaatccacctcaagctgttgttgctgttgcggcaaccagttcacctaatgaaacc
gtcggctcaattacacaaactgaccaaggaaaatcttcatgttcagaccaataccccgaa
atttcactgtag
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