Pisum sativum (pea): 127117805
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Entry
127117805 CDS
T08598
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
psat
Pisum sativum (pea)
Pathway
psat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127117805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psat03019
]
127117805
03012 Translation factors [BR:
psat03012
]
127117805
Enzymes [BR:
psat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127117805
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127117805
Translation factors [BR:
psat03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
127117805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
R3H
HA2_C
OB_NTP_bind
HA2_N
AAA_19
Ank_2
nSTAND3
ResIII
AAA_22
Ank_5
ATPase
AAA_7
T2SSE
AAA_11
TAN
Rad17
AAA_23
ANK_LRRK2
ABC_tran
AAA_16
Motif
Other DBs
NCBI-GeneID:
127117805
NCBI-ProteinID:
XP_050903868
LinkDB
All DBs
Position
2:complement(24131516..24140376)
Genome browser
AA seq
1191 aa
AA seq
DB search
MTRGRKKGHGNPNYGRNPKVEESTRIRLTQALEQFQASNDEAYKFEAGLSNEDRRYVHLM
AQKMGFKSKSYGHGKERRLSIQKVNKKGGNDNQFGNLPLFTFSEESKRALGELFAHFPPG
DGNLKDMVGENSGRTDNTRHKASDIFSRPSMTKDEITRRLDTLTSRRESASDLKEITELR
SKLPIASYKDIITSTVDSHQVVLISGETGCGKTTQVPQYILDHMWGKGEVCKILCTQPRR
ISAMSVSERISRERGETAGENVGYKIRLESKGGKQSSIVLCTTGVLLRVLVSKGSRRSKM
KHVKDEISDITHIIMDEIHERDRYSDFMLAILRDILPSYPHLRLILMSATIDTARFSQYF
GGCPIIQVPGFTYPVKTYYLEDVLSAVKSNKGDSSTFSIPTNNHNLSEEHKHSFDEAINL
AWSNDEWDLLLELVSSEGTPELFNYQHSLTGLTPLMVFAGRSRVGEMCMLLSFGADCNLK
AKDGTSALEVAERENQPEAAEIIKKHLDGSNSTDEQNLLNKYLETVKPELVDVVLIEQLI
RKICSDSKDGGILVFLPGWDDINKAREKLLASSFFKNPLKFVVISLHSMVPSLEQKKVFK
RPPPGCRKIVLSTNIAETAVTIDDIVYVIDSGRMKEKSYDPYNNVSTLQSSWISKASAKQ
REGRAGRCQPGVCYHLYSKLRAAALPDFQIPELKRMPIEELCLQVKMLDSSSKIEVFLAK
TLDPPVSESIRNAIVVLRDIGALSTDETLTDLGEKLGSLPVHPVISRMLFFAILMNCLDP
ALTLACASDYKDPFTLPMLPEDKKRAAEAKAELASLYGGCGDQLAVLAAFECWNNSKKMG
LEARFCSQYYVSAGAMKMLSGMRMQLQTELIRIGFIPSDVSSYSMNAYDPGVLHAVLLSG
MYPMVGRLCFPNKGAKRAIVETASGDKIRLHNRSTNFKLSFKRNLGQTLVVFDEVTRGDM
GINIRNCSLVGQLPLLLLSTEIAVAPGEEDGHMKEGEEEEGEDDDVDEDDEGSGDDGMEL
DTEPSEKNQDKFMSSPDNTVRIIVDRWLYFGSTAIDVSLLYCLRERLSAAILYKVTHPRN
PLPPILGASMHAVACILSCDGCSGMTVAADGMDKLTSMVNATNLGKPPTLAQPTRTQPPI
LGQPTRTQRYGNRPKGSSAEFINHGGFQNGGSSKASTSTSSNIGNPSGISS
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgacaaggggcaggaaaaaaggacacggaaatccgaattacggtcggaatcccaaggtc
gaggaaagcacaaggattcgcctaactcaagctttggaacagtttcaagcttccaatgac
gaagcttacaagtttgaagctggtttgtccaacgaagaccgtcgttatgtgcatctaatg
gcccaaaaaatggggtttaaatctaaaagttatgggcatgggaaggaaaggagactgtca
attcaaaaagtcaataagaagggtgggaatgataatcagtttgggaatcttcctcttttc
acattctcggaagagtcaaaacgggcattaggcgaattattcgcgcattttccacctggt
gatggaaacttgaaagatatggttggagaaaatagtggcaggactgataacacaagacat
aaggcatctgatatttttagcaggccctctatgaccaaagatgaaattactcggagattg
gacaccctaacttctagaagggagagtgcatccgatttgaaagagatcactgagttgaga
tctaagctaccgattgcatcttacaaggatataatcacatcaacagttgattctcaccag
gtagttctcatatctggcgaaactggttgtggaaagactacacaggtcccacaatatata
ttggaccatatgtggggtaaaggtgaggtatgcaagatactttgcactcagcctcgacgt
atctctgcaatgtcagtttccgagcgaatctccagagagagaggagagactgctggagaa
aatgttggatacaagatacgtttagaaagcaaaggtggaaagcaatcatctattgtgcta
tgtactactggagttctattaagggtgttggtttctaaaggttctcgtcgctcaaagatg
aaacatgtgaaggatgaaatttctgacattactcacatcattatggacgaaattcatgaa
agggaccgatattcagacttcatgttggcaatactcagagacatcctcccttcatatcct
cacctacgtctgatattaatgagtgcaaccattgatactgccagattttctcaatatttt
gggggctgcccaattatccaagttccagggttcacttatccggtcaaaacttattatctg
gaagatgtactttctgctgtaaaatcaaacaagggtgatagttccacatttagtattcca
acaaacaatcacaacctaagtgaagaacacaagcattctttcgatgaagctattaatttg
gcttggtctaatgatgagtgggacctactgttagagttggtttcttctgaaggaacccca
gaactctttaattaccagcattctttaaccggccttacaccgttaatggtgtttgctgga
agaagtagagttggtgaaatgtgcatgctcttatcttttggggcagattgcaatttaaag
gcaaaagatggaacaagtgcactcgaggttgcagaaagagagaaccaaccagaagcagct
gaaataataaaaaagcacctggatggttccaactccactgatgagcagaatttacttaat
aaatatcttgaaacagtcaaacctgaacttgttgatgttgttctgatagagcagctgata
agaaaaatatgttccgattcaaaagatggaggcatccttgtttttcttccaggatgggat
gatataaacaaagcgcgtgaaaaattgcttgcatcctcttttttcaagaatcctttgaaa
tttgtggtcatatctctgcattcaatggttccatccctggagcaaaagaaggtttttaag
cgcccacctcctgggtgccgcaaaatcgttctgtcaactaatattgctgaaacagctgtc
accattgatgatatagtgtatgtcatagactctggacgaatgaaggaaaagagttatgat
ccttataataacgtgtcaactcttcaatcatcttggatttcaaaagccagtgctaagcaa
cgagaggggcgtgctggccgttgtcaacctggagtttgttatcatttgtattcgaagctt
cgagcagctgcattgccagactttcagattccagaacttaagagaatgcctatcgaggag
ctatgcctgcaggtaaagatgcttgattcaagcagcaaaatagaagtgtttcttgccaag
acattagatccaccagtttctgagtccatacgtaatgctattgtagtccttcgtgatatt
ggggcattgtcaactgatgaaacgctcactgatcttggagagaagcttggttctctccct
gttcacccagtaattagcaggatgctgttttttgctatattaatgaactgccttgacccg
gctttgactctagcatgcgcatctgattataaagatccatttacacttccaatgttacct
gaagacaagaagagagccgcagaggccaaagccgagcttgcttctttatatgggggatgt
ggtgatcagcttgctgtactagctgcatttgaatgctggaacaattcgaaaaaaatgggt
ctggaagcgcggttttgttcgcagtattatgtgtctgcaggtgccatgaagatgttatct
ggcatgcgtatgcagctccaaacagaacttattcgaattggatttattccttcagatgtt
tcaagttacagcatgaacgcgtatgaccctggtgtgctgcatgcggttttgttatcgggt
atgtatccaatggttgggagattatgttttccaaataaaggtgcaaaaagggctattgtc
gaaactgctagtggtgataaaatacgcctgcacaaccgttccacaaattttaagctgtcg
ttcaagagaaatttaggtcagactttagttgtgtttgacgaggttactcgcggtgatatg
ggtataaacataaggaattgcagtcttgttggacagcttccactcttgctgctttcaact
gagattgctgttgctccaggagaagaggatggtcatatgaaggagggagaggaggaggaa
ggagaggatgacgatgtcgacgaagacgatgaagggagtggagatgatgggatggagttg
gatactgagcccagtgaaaaaaaccaggataagttcatgtcttcccctgataacactgtt
agaataattgtggaccgttggctttattttggttcaacagcaattgatgtttctctgcta
tactgcttgagagagcgattatcagcggcaatcttatacaaagtaacacatccaaggaat
cctcttcctcccatcctaggggcctctatgcatgctgtagcttgcattctatcttgtgat
gggtgttctggcatgacagtggcagccgatggcatggacaaactgaccagtatggtaaat
gcaacgaatctagggaagccgccaacattagcacagccaacacggacacagcccccaata
ttgggacagccaacccgaacacagcggtatggtaatagaccaaaaggatcctctgcagaa
tttataaatcatggtggattccagaacggtggctcttctaaagccagcacatctacatct
agcaacattggaaatccaagtgggatcagctcctaa
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