Pisum sativum (pea): 127117840
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Entry
127117840 CDS
T08598
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
psat
Pisum sativum (pea)
Pathway
psat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127117840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psat03019
]
127117840
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
127117840
mRNA cycle factors
Common to processing body (P body) and stress granule
127117840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
127117840
NCBI-ProteinID:
XP_050903915
LinkDB
All DBs
Position
2:complement(28760424..28766850)
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AA seq
975 aa
AA seq
DB search
MMIVETDKMSAPSPRERAQRLFDKNLELEKKRRRSAQAHVPSDPSIWPQQRENFEAIILE
DHAFSEQHNIEYSLWVLHYKRIEELRAHFNAAISSASSKSPQGGKGSVRPERITKIRQQL
KTFLSEATGFYHDLIMKIKAKNGLPLGYFEDSENLIVMEKDGKKSAEMKKSLISCHRCLI
YLGDLARYKGLYGEGDSKKREFAAASSYYLQAASIWPSSGNPHHQLALLASYSGDELAVI
YRYFRSLAVDSPFTTARENLIVAFEKNRQSYSQLSGDAKAVAVKESSGQLDGKGRGKIEA
KLVTRGNGVEAYPRKEGASNIQETYKSFCTRFVRLNGILFTRTSLETFAEVLSLISNGLR
ELLSSGQDEELNFGQDALENGLAIVRIISIIVFTVHNAKKESEGQTYAEIVQRAVLLQNA
FTAAFELMSIIIDRCVQLQDPSCSFLLPGILVFVEWLACYPDLAAGNDVDENQSTVRSKF
WNHCISFLNKLLSVGPMSIGDEEETCFNNMSRYEEGETDNRLALWEDFELRGFVPLIPAQ
TILDFSRKHSFGSDREKERKSRVKRILAAGKALANIVRIDQKRIYFDSKGKKFIIGVEPS
ISDDFVLATGKPIADDLVKENEADKPKSGIAQSDHHQYLEEEDDDDDEVIVFKPIVAEKR
ADVLVVSSGVTHRGLEPVPVASGVDVKFNVNSAFHPPNDVDLQTSLPASVSCMMPQSLQP
VQQHSSRWLEGGVSLVNSFEGLGFSENGHVVKPKLPLHEALSIFNDASLSVPFQQSVSTG
TKSFYGLPKTEDSMIPSKVDTVASSGVITDNSYVKSLSVSQADLRKSPVSRPSRHRGPPP
GFSHVSPRLDMESTVSDSISGNPVMDDYSWLDGYQLPASTKGSGPDGPIAYTQSNSHLVN
HNISSGAVCFPFPGKQVPSALQGVKQNGWQDYHSTEILNAHHHQPQQPITNGNQHFTPLP
EQFQGQSIWTGRYFV
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgatgatagtagaaactgataagatgtctgctccttcaccgcgggagcgtgcacagcgc
ctttttgataagaaccttgaattggagaaaaagcgccgtagatcagctcaggcgcatgtt
ccgtcagatcccagtatttggccacagcagcgtgagaactttgaagcaataattcttgag
gatcatgctttttctgagcagcacaatattgagtattccctttgggtattacattataaa
cggattgaagagttaagggcacatttcaatgctgctatttcgtctgcaagctcaaaatca
cctcagggagggaaaggttctgtacgacctgagcggataactaaaataaggcagcagttg
aagacattcctttcagaagcaactgggttttaccatgatcttatcatgaaaatcaaagcc
aagaatgggcttcctctgggttactttgaggactcagagaatctgattgtgatggagaaa
gatggaaagaaatctgccgagatgaagaaaagtttgatatcttgtcatcgttgtttgata
tacttgggtgatcttgctcgctacaaaggattgtacggtgaaggggactcaaaaaagcgt
gagttcgcagcagcttctagttactatttacaagctgcgtctatctggccttcaagtgga
aatccccaccatcagcttgctttgttggcttcatattctggtgatgagctggcagttatt
tatcgttattttcggagtctggctgtggatagtccatttacaactgctagagaaaattta
atagttgcatttgagaagaatcgacaaagttactctcagctttctggtgatgctaaagct
gttgcagtcaaggaatcttctggacagttagatggcaaaggaagagggaagatagaagca
aaacttgtgactaggggtaatggtgtggaagcatatcctagaaaggaaggagcatccaac
atacaggagacttacaaatcgttctgtactcgctttgtacgtctaaatggaatcctgttc
actcgtacaagtcttgagaccttcgctgaagttctctctcttattagcaatggcctgcgc
gagcttctgtcttcgggtcaagatgaagaacttaattttggccaggatgctcttgagaat
ggtcttgccattgtcagaattatttccattatcgtctttacagttcataatgcgaagaag
gaatctgaaggtcaaacttatgcagaaattgtacagcgggctgttctacttcaaaatgca
ttcactgcagctttcgaactgatgagtattattatagacagatgcgtgcagctgcaggat
ccttcttgtagttttcttctaccaggcattttggtttttgttgagtggttggcatgttat
cccgatcttgctgcaggcaatgatgtggatgagaatcaatcaactgttagatcaaaattt
tggaatcattgtatttccttcttgaacaagcttctttcagttgggcctatgtctattggg
gatgaagaggagacttgctttaataacatgagtaggtatgaagaaggggaaacagataac
cgtctggctttgtgggaggactttgagttaagaggatttgttccacttatccctgcacaa
acaatcttggatttttctaggaagcattcatttggaagtgatagagaaaaagaaagaaaa
tcccgggtcaaaaggattttagctgcaggaaaggctttagctaacattgttcggattgat
cagaaaaggatatattttgattcaaagggaaagaaattcataattggtgttgagcctagt
atctcagatgattttgttcttgccactggcaagcctattgcagatgacttggtgaaagaa
aatgaagcagacaagccaaagtcggggattgctcagtcagaccaccaccagtatctggaa
gaagaggatgacgatgatgatgaggttattgtttttaaacctatagtagccgagaagcga
gctgatgttttggttgtttcatcaggggtaactcacagaggtttagagccggtcccagta
gcttcaggagtggatgttaaatttaatgttaattctgctttccaccctcccaatgatgtg
gaccttcaaacttctttacctgcttctgttagttgtatgatgcctcaaagcttgcaacca
gttcagcagcattcttcaaggtggctagaggggggagtttctctggttaacagttttgaa
ggtcttgggttctcggagaatgggcatgttgtaaaacctaagctcccactgcatgaagct
ttatcaatctttaacgacgcatcactttctgttcctttccagcaatctgtaagtactggg
actaaatcattttatggtctcccaaaaactgaagactcgatgataccatccaaagttgat
actgttgcatcttctggagtcattacggataactcttatgtgaagtcattgtcagtttcg
caagctgatttgagaaaatctccagttagccgtccttctaggcaccgtggacctcctcct
ggtttcagtcatgtttctcctaggcttgatatggaatccactgtttcagattcaattagt
gggaatcctgttatggatgactacagttggttggatggatatcagttgcctgcatcaacc
aaaggttcaggccccgatggtcctattgcttatactcaatcaaattcccatctagtaaat
cacaatatttcgagtggggcagtttgctttccttttcctggaaaacaagttccatctgca
ctgcagggggtcaaacagaatggttggcaagattatcatagtactgagattttaaatgca
caccatcatcagccacaacaacctatcacaaatggaaatcaacactttactccactgcct
gagcaatttcaaggacagtcaatctggacaggtcgttactttgtgtga
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