Lathyrus oleraceus (garden pea): 127118625
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Entry
127118625 CDS
T08598
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
psat
Lathyrus oleraceus (garden pea)
Pathway
psat03013
Nucleocytoplasmic transport
psat03015
mRNA surveillance pathway
psat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127118625
09122 Translation
03013 Nucleocytoplasmic transport
127118625
03015 mRNA surveillance pathway
127118625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psat03019
]
127118625
03041 Spliceosome [BR:
psat03041
]
127118625
Enzymes [BR:
psat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127118625
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127118625
Spliceosome [BR:
psat03041
]
Complex C
Other components
EJC/TREX
127118625
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127118625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
127118625
NCBI-ProteinID:
XP_050904809
LinkDB
All DBs
Position
2:153432795..153433863
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AA seq
320 aa
AA seq
DB search
MRNLDYIFSVSAHAVASASLDILASLEGLLDQRSSEAWSYRRLPTPTAILPVTIDSEEED
EKVPDSAGAKVNGESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQA
IWGMGVLCQAKSGMGKTVVFVLSTLQQIDPIPGQVSALILCHTRELAYQICHKSERFSTY
LTDLKVVVFYVGVNIKVHKDLLKNECPQIVVGTPGRILALSRDKDLSLKNVKHFILDECD
KMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTL
HGLVQHYIKLKEEEKKPEVE
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaatcttgattatatattttcagtttcagcacatgctgtagcaagtgcctcacta
gatattttggcgagcctcgaagggttgttagaccagagatcatccgaggcatggagttac
cgtcgactccctactccaactgctatactccccgtcaccattgacagtgaagaggaagat
gaaaaagttcctgattccgctggagcaaaagttaacggtgaatccggaaagaagggctat
gttgggatccacagttcaggattcagagactttcttctaaagccagagcttctacgggct
attgtggattcaggatttgagcatccttctgaagtacaacatgaatgcatacctcaagca
atctggggaatgggtgttttatgccaagcaaaatctggaatgggaaaaactgttgttttt
gttttatcaactttgcagcagattgatcctattccaggccaagtttctgctcttattctg
tgtcatacaagggaattagcttaccagatatgccataagtctgaaaggttcagcacctac
ttgactgatctcaaggttgttgtcttctatgttggtgtcaacattaaagttcacaaggat
ctgttgaaaaatgaatgtccccaaattgttgttggtacacctggaagaatactagcattg
tccagggataaggacctttctttgaagaatgtcaagcatttcattttagatgaatgtgat
aagatgctggaatcacttgacatgaggaaagacgtgcaagacattttcaagttgactccc
cacgataagcaagttatgatgttttctgcaacgcttagcaaggaaatccgcccggtctgc
aaaaaatttatgcaagatcccatggaaatttatgttgacgacgaagcaaaattgaccctt
catggtcttgttcagcactacatcaaattgaaggaggaggagaaaaaaccggaagttgaa
tga
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