Lathyrus oleraceus (garden pea): 127119887
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Entry
127119887 CDS
T08598
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 4
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
psat
Lathyrus oleraceus (garden pea)
Pathway
psat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127119887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psat03019
]
127119887
Enzymes [BR:
psat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
127119887
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127119887
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127119887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
127119887
NCBI-ProteinID:
XP_050906204
LinkDB
All DBs
Position
2:complement(421035870..421040445)
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AA seq
390 aa
AA seq
DB search
MLMLKPLAALSPSLSASSVARRMSSSPTFPKFISVEAADIHSRTRPDGFRFSLVSYNILA
QAYVKSIIFPYSPRSSLRWSRRSNSILDVLKNLGADFFCLQELDEFDSFYKGKMQELGYS
SIYMKRSGEKKRDGCGIFYKDELAELVLEEKIEYNDLVKTIPDGNSSKDDGHNNVQTTQL
DKQKDVATNTGPKSSTDDHGDPNDPRVRLKRDCVGILAAFKFKGPPHQFLIVANTHIYWN
PEWADVKLAQAKYLLSRLSQFKTLVSDRFECTPEVIVAGDFNSQPGDPVYQYLISGNPSS
ELITDCIEDLPIPLSSVYASTRGEPPFTNYTPGFTGTLDYILCCPSDYMKPISYLELPDS
EATDIAGGLPNLSHPSDHLPIGAEFEIVKE
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgctaatgctaaaacctcttgctgcgctttctccttccctctccgcatccagtgttgcg
aggagaatgagttcttcaccaacatttcccaaattcatttcagttgaagccgctgatata
cattccagaactagaccagacggtttcagattcagccttgtctcctataacattttggct
caggcttatgtcaagagcattattttcccatactctcctcgttcgtctctcagatggagt
cgtcgttcgaactcgattttagatgttcttaagaatttgggagctgattttttctgtctg
caggaacttgatgaatttgatagcttttacaaaggaaagatgcaggagttgggatattct
tcaatttatatgaagaggagcggagagaaaaagcgtgatggatgtgggatattttacaag
gatgaacttgcagagttggtcttggaggaaaaaattgaatacaatgatcttgtaaagaca
attccagacgggaactcttcaaaagacgatggacacaacaatgtccaaacaacccagcta
gataaacaaaaggatgttgcgaccaatactggacctaaatcgagtacagatgatcatgga
gatccaaatgatcctcgtgtgagactaaagcgtgattgtgttggaattctggctgcattc
aaattcaaaggtccccctcatcaatttcttattgtagccaacacacatatttattggaat
cctgagtgggctgatgtcaaacttgcacaagctaaatatcttctatctcgcctgtcacag
tttaaaacactggtatctgatagatttgaatgcacacctgaagtgattgtggccggtgac
ttcaactctcagccaggagatccggtttatcagtacctcatatctggcaacccttcatca
gaactgataaccgactgtatagaggaccttcccattcctctaagtagtgtctatgcttct
actagaggagagccaccatttacaaactatacacctggcttcaccggaacactcgattat
atattatgttgcccctctgactacatgaaaccaattagctatcttgagcttccagactcc
gaagcgacagatattgctggtggactgccaaacttgagtcatccaagtgatcatctaccc
attggtgctgaattcgaaatagtgaaggaataa
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