Pisum sativum (pea): 127128786
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Entry
127128786 CDS
T08598
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
psat
Pisum sativum (pea)
Pathway
psat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127128786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psat03019
]
127128786
03041 Spliceosome [BR:
psat03041
]
127128786
03009 Ribosome biogenesis [BR:
psat03009
]
127128786
03016 Transfer RNA biogenesis [BR:
psat03016
]
127128786
Enzymes [BR:
psat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127128786
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
127128786
Spliceosome [BR:
psat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127128786
Complex C
U4/U6.U5 tri-SnRNP related factors
127128786
Ribosome biogenesis [BR:
psat03009
]
Eukaryotic type
Pre-60S particles
Helicases
127128786
Transfer RNA biogenesis [BR:
psat03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
127128786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
127128786
NCBI-ProteinID:
XP_050914116
LinkDB
All DBs
Position
3:535455577..535464579
Genome browser
AA seq
982 aa
AA seq
DB search
MGSLKRKSPEEETTATTTSQVQYDCLHDVSYPHGYVHASSSTTSDSSQPKEPAKKFPFTL
DPFQSQAISCLENSESVMVSAHTSAGKTVVALYAIAMSLRDGQRVIYTSPIKALSNQKYR
EFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTREVAWIIFDEVHYMRDR
ERGVVWEESIVMSPKNARFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYI
FPSGSEGLYLVVDEKGKFREDSFHKALNALVPAADSDRKKENAKWQKGLVLGKAAEESDI
FKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNGDTEKDNIEKIFWCAMDMLSDD
DKKLPQVLNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAK
TVVFTNVRKFDGDKFRWLTSGEYIQMSGRAGRRGIDDRGVCILMIDEKMEPSTAKSMVKG
AADSLNSAFHLSYNMILNQMRCEDGDPENLLRNSFFQFQADRAIPDLEKQIKAFEEERES
IVIEEEDSLKDYYNLLEQLRSLNKDVRDIVLSPRHCLPFLQPGRLVSIQCTSRDEELSPI
FIEDQLTWGLIINFERIKGVSEDDANIKPEDASYKVDVLTRCVVRKDKLGKKSVEIVPLK
EHGEPIVVSIPISQINTITGLRLYIPKDLLPLEARENTLKKIKETLSRFEDKGLPRLDPE
EDMKIQSSSYKKASRRIESLERLFEKHEIAKSPLIKQKLKVFQRKQELTAKIKSIKKTLR
SSTTLAFKDELKARKRVLRRLGYATSDNVVDLKGKVACEISSADELTLTELMFNGVFKDI
KVEEMISLLSCFVWREKINDAAKPREELDMLYSQLQDTARRVAQLQLECKVQIDVDTFVK
SFRPDIMEVVYAWAKGSKFYEIMEITKVFEGSLIRSIRRLEEVLQQLIEAAKSIGETELE
AKFEEAVSKIKRDIVFAASLYL
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggggtctctgaagagaaaatcgccggaagaagaaacaacagcaacaacgacttcacaa
gtgcaatacgattgtcttcacgacgtttcatatccacatggctacgttcacgcttcatct
tctactacttctgattcatctcaacccaaagaacctgctaagaagttcccgtttacactt
gatccctttcaatctcaagctattagttgtcttgaaaattctgaatccgttatggtatct
gcacatacatctgctgggaaaactgttgtggctttatatgcaattgctatgtcgcttcga
gatggtcaacgtgttatctacacttctcctatcaaggcacttagtaaccagaagtataga
gaatttaaagaagagttttctgatgttggtttgatgactggtgatgttaccattgatccc
aatgcttcttgcttggtcatgactactgaaatctggcgaagtatgcaatacaaagggtct
gaggtcactagggaggtggcttggatcatttttgacgaggtgcattacatgcgtgatcga
gaaagaggtgtggtttgggaagagagcattgttatgtcgccaaagaatgctcgttttgtc
ttcctgtctgctactgtccctaatgccaaggaatttgctgattgggtggcaaaggtgcac
caacagccttgtcatattgtttatacagattaccggccaactccccttcaacattatatt
tttccttccggaagcgagggtctatacttagttgtggatgaaaagggaaaatttcgcgaa
gacagttttcataaagctttgaatgctcttgttcccgctgctgatagtgataggaaaaaa
gaaaatgccaagtggcaaaaaggtctggtgctaggcaaggcagctgaagaaagcgacata
ttcaagatggtgaaaatgatcatccaacgtcaatacgatcccgtgatactgttcagcttt
agcaagagggagtgtgaatttcttgcaatgcagatggcaaaaatggatcttaatggggat
acagagaaggacaacatagaaaaaatattttggtgtgctatggatatgctttcagatgat
gataagaagctgcctcaggttttgaacatgctgcccttgctaaaacgtggaatcggagtg
catcactctggattactcccaattctaaaggaagtgatcgagatcttatttcaagaagga
ctaatcaagtgtttgtttgccacagagaccttcagtattggtttgaacatgcctgcaaaa
actgtagtttttacaaatgtccgaaaatttgacggggacaaatttaggtggttaaccagt
ggagaatacatacaaatgagtggtcgtgctggtcgacgaggtattgatgatcggggagta
tgtatcctcatgattgatgagaagatggagccttctactgctaaatcgatggttaaaggg
gcagcagatagtttaaacagtgctttccatttaagctacaacatgattttgaaccaaatg
cgctgtgaagacggtgatcctgaaaatttactccgtaattcattttttcagttccaagct
gatcgtgccattcccgatcttgagaaacaaataaaagcgtttgaagaagagagggaatca
attgttattgaagaagaagacagtttgaaggattattacaatcttctagagcagcttaga
agtttgaataaggacgttcgtgacattgtgttatctccaaggcactgtttacctttttta
cagcctgggaggcttgtttctatccaatgtacttcaagggatgaagaactttctcccatt
tttattgaggatcagttgacttgggggttgatcattaattttgaaaggattaagggcgtt
tctgaagatgatgcgaacataaagccggaagatgcatcttacaaagttgatgttcttaca
agatgtgtggtgaggaaagataaacttggaaaaaaatctgttgagattgttcctctgaaa
gaacatggagaacctatagtggtttccattcctatctctcagatcaatacaattaccggt
ctgcgtctatacataccaaaggatcttttgccattggaagctcgagaaaacacactgaaa
aaaattaaggaaactctttctagatttgaggataagggattgccacgtctagatccagaa
gaagacatgaagattcaaagtagctcgtacaagaaagcatcacggaggatagagtctttg
gagaggctatttgaaaagcatgaaattgcaaagtcaccgcttataaagcagaagttaaaa
gtttttcagaggaagcaagagcttactgcaaaaataaagtcaattaagaaaacattaaga
tcatctactactttagcattcaaggatgaactcaaggcacgaaaaagggttcttcggagg
ctaggatatgctacaagtgacaatgtcgtggacttgaaagggaaggttgcttgtgaaata
agtagtgcagatgaattgacccttacagaactcatgttcaacggtgtcttcaaggacata
aaagtagaggagatgatttctctcctgtcttgttttgtctggcgagaaaaaatcaatgat
gctgccaaacctcgagaagaacttgatatgctctattcacaattacaagacactgcccgg
agagttgcccaacttcagcttgaatgcaaggtacaaattgacgttgacacttttgtaaag
tcatttagacctgatattatggaggtggtgtatgcttgggcgaaaggttcaaagttctat
gagatcatggagattacaaaagtttttgaaggtagcttaattagatcaattagaagactc
gaggaagttcttcagcagttaatagaagcagctaagtcaattggagaaactgaacttgag
gcaaagtttgaagaggctgtgtccaaaatcaagagggacattgtctttgcagcatcattg
tatttgtag
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