Pisum sativum (pea): 127132052
Help
Entry
127132052 CDS
T08598
Name
(RefSeq) endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
psat
Pisum sativum (pea)
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psat03036
]
127132052
Chromosome and associated proteins [BR:
psat03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
127132052
microRNA pathway
RISC loading complex
127132052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DND1_DSRM
PAZ
dsrm
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Dicer_PBD
Piwi
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
127132052
NCBI-ProteinID:
XP_050916878
LinkDB
All DBs
Position
3:complement(5207308..5218038)
Genome browser
AA seq
1880 aa
AA seq
DB search
MEDAAIRVSSPSYWLDACEDIPCDDFIDLHVSSIVSEPNQLQPQSNHQDFFGGIDRILDS
IKNGAGLPLPVNPPPQPPPLLTDDDANLSNVNQAIVTNGTVVDQDEERFSKRARVNGCNN
ERRINHQTNGKEKFERCFNGRKRPRSQDFKKRDSSFSVRRDVRGYWERDKSTGSNDLVFR
SGTWEPDRVRQDKMVIDIKQETSDDKNTEQVSKEKVPEEKARQYQLDVLEQAKSRNTIAF
LETGAGKTLIAVLLIKSIHETLNQQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYC
GEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEGINLLILDECHHAVKKHP
YSLVMSEFYHTTPREKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDR
KELEKHVPMPSEIVVEYDKAASLCYLHEQIKQMEAEVEEAAKSSSRRSKWQFMGARDAGA
KEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCSYKVAQSFLAALQNDERANY
QLDVKFQESYLSKVVSLLKCQLSEGAVSDKNDGVDDSGNGAAHNGSNEHEEIEEGELPDS
HVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTDDFRAIIFVERVVSALVLPKV
FAELPSLSFVKCASLIGHNNSQEMRTHQMHDTIAKFRDGRVTLLVATSVAEEGLDIRQCN
VVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRREAIER
TDLSHLKDTSRLISVDTHPETIYQVKSTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEF
IMEKHENSGGPTEYSCRLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTD
MLLPDKGSGGEKEKAEQNDEGDALPGTARHREFYPEGVADILKGEWILSGKDACNDSKLL
HLYLYTIKCENVGQSKDPFLTQVSDFAVLFGTELDAEVLSMSMDLFIARTVTTKASLVFR
ESIDITESQLASLKSFHVRLMSIVLDVDVEPTTTPWDPAKAYLFVPLVGDKSLDPMNQLD
WHLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGLAFGQKSHPTYG
IRGAVAQFDVVKASGLVPNRDSVQTEKHINMTSKGKLMMADTCTNADDLVGRIVTAAHSG
KRFYVDSIRYEMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLVYKQQPLIRGRGVSY
CKNLLSPRFEHSEAHEGESEETHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVE
SMLLAVQLKNMINYPVQASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYP
QKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYILADRFAPSRWAAPGVLPVFDEDTKDEE
SSLFDQEKSICKIEMMDVTDGFEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVE
GGKNAANHLMKWIGIHIEIDPDEMECTTKPSNVPDSILRSVDFDALEGALNLKFKDKGLL
IEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFSYTDLPPGRLTDLRAAAVNNEN
FARVTVKHNLHLHLRHGSSALEKQIKEFVKEVQEELLKPGFNSFGLGDCKAPKVLGDILE
SIAGAIFLDSGKNTAVVWEVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRA
GNLATVEVFIDGVQVGTAQNPQKKMAQKLAARNALAALKEKEVGKIQEKNDENGTKNGNQ
TFTRQTLNDICLRRNWPMPFYRCVSEGGPAHAKRFTFAVRVNTTDKGWTGECVGEPMPSV
KKAKDSAAVLLLELINKLYS
NT seq
5643 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgcagcaattagggtttcatccccctcttactggttggatgcttgcgaagat
atcccttgtgatgatttcattgatctccatgtttcttccatcgtctctgaacccaaccaa
ctacaaccacaatccaatcatcaagattttttcggtggtattgatcgaatcttggacagt
atcaaaaacggtgctggcctccctcttcccgtcaatccgccacctcaaccaccaccgctt
ctcactgatgatgatgctaacctctccaatgtcaatcaagctattgttactaatggtact
gttgttgatcaagatgaagaaaggttcagcaaaagagctcgtgttaacggatgcaacaat
gagagaagaatcaatcatcaaacgaacgggaaggagaaatttgagaggtgtttcaatggt
cggaagaggccgaggagtcaagatttcaagaaaagggatagctcttttagtgttaggaga
gatgttaggggttattgggagagggataagtctactggttccaatgatttggtgtttcgc
tctggaacttgggaacctgatcgggttcgccaagataaaatggttatagatatcaaacag
gaaaccagtgatgataagaatactgagcaggttagtaaggagaaggttcctgaggaaaaa
gcaagacagtatcagttggatgttctagagcaggcaaagagtagaaataccatagctttt
ctagaaactggagctgggaaaaccctcattgccgttcttctcattaaatctatacatgag
actttgaatcagcagaataagaaaatgcttgcagtgtttttggttcctaaagttccactt
gtttaccagcaagctgaagtaattcgtgagcgcactggatatcaagtgggccactattgt
ggagaaatggggcaggatttctgggatgctcgaaggtggcagcgagaatttgacactaag
catgttttagtcatgactgctcaaatacttttgaacattttgagacatagcataataaaa
atggaaggaatcaatctcttgattctggatgaatgccatcatgctgtaaagaaacaccca
tattccctggtgatgtccgagttctaccatacaacacccagagaaaagaggccatctgta
ttcggaatgactgcttctcctgttaaccttaagggtgtctccagccaagtagactgtgca
ataaaaattcgtaatcttgaaagtaagctagattcaatagtttgtaccattaaagatcgt
aaagagctggagaaacatgtgcctatgccttctgaaattgtggtggagtatgataaagca
gccagtctctgttatttacatgagcaaataaagcagatggaggctgaagttgaggaagct
gcaaaatctagttcaagaagaagcaaatggcagtttatgggagctagagacgctggagct
aaggaagagctgcgccaagtatatggtgtttctgaaagaacagaaagtgatggagctgca
aacctaattcagaagttgagagctattaattatgcacttggtgaactgggacagtggtgt
tcatataaggttgcacagtcttttcttgcagctctgcaaaatgatgaaagggcaaactac
caacttgatgtcaagtttcaggaatcttatctgagtaaagttgtgtcccttctgaaatgt
caactgtcagagggtgccgtttccgacaaaaatgatggagtagatgactcaggtaatggt
gctgctcacaatgggtctaatgaacacgaagagattgaagaaggagagcttccggacagt
cacgttgtctctggcggggagcatgtggatgtcataataggtgctgctgtggcggatggc
aaggtgacccctaaggtgcaggctttaatcaaaatactcctcaagtatcaaaacacagac
gactttcgtgcaatcatctttgttgagcgtgttgtgtctgcgttagttctaccaaaggtt
tttgctgagcttccatctcttagttttgtgaagtgtgcaagcttgattggtcacaacaat
agtcaggaaatgcggacccaccaaatgcatgatacaattgctaagttccgtgatgggcgg
gtcacattgttagttgccactagtgttgctgaagaaggacttgatatccggcaatgtaat
gttgttattcgctttgatctcgcaaagactgttctggcatacattcagtctaggggacgt
gctagaaagcccgggtctgattacatcctaatggttgagaggggaaatttgtcacatgaa
gcattcctaaggaatgccaggaacagtgaggagactttgcggagagaagcaatagagaga
acagaccttagtcatctgaaagacacttcaaggttgatttctgtagatacccatccagaa
acaatttaccaggtgaaatccactggtgcagtagttagcttaaattctgctgttggtctt
gtccacttctactgctctcagctacctagtgacagatattcaattcttcgtcctgagttt
atcatggagaagcatgaaaactccggaggccccactgaatattcttgcaggcttcaactg
ccatgtaatgcaccatttgaaaacctggagggtcctatctgcagttcaatgcgcttggca
caacaggcggtttgtctagctgcttgcaaaaaattgcatgagatgggagcatttactgac
atgttattgcctgataaaggaagtgggggagaaaaagaaaaggctgagcaaaatgatgaa
ggggatgcacttccagggactgctagacatagggagttctatcctgaaggtgtggccgat
attctgaagggagaatggatcttatctggaaaagatgcttgcaacgactccaaattgctt
catctttatttgtataccataaagtgcgagaatgtaggccaatcaaaggatccgttcttg
actcaggtttccgattttgcagtactttttggcactgagctggatgcagaggtgttatcg
atgtccatggatctatttattgctcgaaccgtgactaccaaggcatctcttgtctttaga
gagtcaatagatatcactgagagtcagctggcatccctgaaaagctttcatgtaagatta
atgagcattgtcttggatgtggatgttgaaccaactaccactccttgggatcctgcaaaa
gcatatttgtttgtcccattggttggagataagtctttagatcctatgaaccaattagac
tggcatctggttgagacaataattggagctgatgcatggaaaaatcccctccagaaggct
cgaccagatgtttaccttggcactaatgagagaactttaggtggtgatagaagggaatac
ggatttgggaagttgcgtcatggcttggcttttgggcaaaaatcacatccaacctatgga
atcagaggagctgtggcccagtttgatgtagtgaaagcttcaggattggttcctaacaga
gattccgtgcaaacagaaaagcatatcaacatgactagcaaaggaaaattgatgatggca
gatacctgtaccaatgcagatgatctggtagggagaattgtaactgctgctcattcaggg
aagaggttttatgttgattcaatacgctatgaaatgtcagcagagaactctttccctagg
aaagaaggttatcttggtcctctggaatacagttcatatgctgattactacaagcaaaaa
tatggtgttgatttggtttacaagcagcaacctcttatacgagggcgtggtgtatcatac
tgcaagaatcttttgtcccctcgatttgaacacagtgaagcacatgaaggtgaatctgaa
gagactcatgacaaaacttactatgttttccttcctcccgagctatgcttggtacaccca
ctgcctggatcactcgttcgtggtgctcagaggctgccttcaataatgaggagggttgaa
agcatgctgcttgctgttcagcttaagaacatgataaattatcctgttcaggcttcaaag
atcttggaggccttgaccgctgcctcttgccaggagacattttgctatgaaagggcagag
cttctaggagatgcttatctgaaatgggttgttagtcgctttcttttcctaaaatatcca
cagaaacatgaaggccagcttactaggatgagacaacaaatggtcagtaacatggtatta
tatcagtatgcattaagtaaaggtcttcaatcatatattctagcagatcgctttgcccca
tccagatgggcagctcctggggtgctgcctgtatttgatgaggatacaaaggatgaggag
tcatctttatttgaccaagagaagtccatttgtaagattgagatgatggacgtcactgat
gggtttgaggatgaaatggaagatggcgagcttgagagtgattcaagttcttaccgagtt
ctgtccagcaagacacttgcagatgttgtggaagcactgattggagtatattatgtcgaa
ggtggtaagaatgctgctaaccaccttatgaaatggattggtattcacatagagatcgat
cccgatgagatggagtgtacaacaaagccatccaatgttccagacagcatactcaggagt
gttgatttcgatgctttagaaggtgctctaaatcttaagtttaaagacaaggggctgctg
atagaagccataactcatgcttcaagaccatcctcaggagtatcctgttatcagcggttg
gagtttgttggggatgctgtgttggaccatcttataaccaggcacttatttttctcgtac
acagatctgccaccaggacgtctgactgaccttcgagctgctgctgtaaacaatgaaaat
tttgcacgtgttacagttaaacacaatcttcacctgcatttacgacatgggtccagtgcc
ctagaaaaacagattaaagaatttgtgaaggaagttcaagaagaattgttaaaaccaggg
tttaactcgtttggtcttggagactgcaaagctcccaaggtccttggtgacatccttgaa
tctattgccggtgctatttttcttgacagtgggaagaatactgctgtcgtttgggaggtt
tttcagcctcttttgcatcctatggttacaccagagactttgccaatgcatcctgtgcgt
gagctgcaagagcgatgccagcagcaggccgaaggtttggagtacagagctagtcgtgct
ggcaatttggcgactgttgaagtattcattgatggggtgcaagtagggactgctcaaaat
ccacagaaaaaaatggcacagaaattagcagccagaaatgcccttgctgctttgaaagag
aaggaagtgggcaaaattcaggagaaaaatgatgaaaacgggacaaagaatgggaaccag
acatttactagacaaacattaaatgacatctgtttgcgaagaaactggcctatgccattc
taccggtgtgtgagtgagggtggtcctgcgcatgcaaagaggtttacatttgcggtgcgt
gtgaatactactgataaaggttggacaggtgagtgtgttggagagccaatgccaagtgtc
aagaaggccaaagactcggctgctgttcttctcttagaactaataaacaaattatactcg
tga
DBGET
integrated database retrieval system
