Pisum sativum (pea): 127132128
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Entry
127132128 CDS
T08598
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
psat
Pisum sativum (pea)
Pathway
psat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127132128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psat03019
]
127132128
Messenger RNA biogenesis [BR:
psat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
127132128
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
127132128
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GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
EXOSC1
Motif
Other DBs
NCBI-GeneID:
127132128
NCBI-ProteinID:
XP_050916956
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Position
3:11778242..11780679
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AA seq
387 aa
AA seq
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MIQMLIPHLKLKTQNPISFLQTPFLSLAHPLYSSHPSVITFLLLFLSRSTFHCCCVNMDI
ETRRIQLQFNQTQKLRLQKAMESLSSNVNFDASVTIADSIPVNFEEGVLKGHGTADLDGE
VVSTLCGTVERVNKLVYVRPLSSRYKPEVGDIVIGRVVEVAQKHWRLDINCSKNAYLMIS
AMNVLDGVQRRRTSGDELNMQCIFAEDDYICAEVRDFTHGDIHLQTRSQKHGKLTSGQLL
TVAPYLVKRQKQHFHHLDQYGIDLIIGCNGFIWVGEHVGVRDDMVEDQVNRSEPNVSVPN
KSSASLEEQEKNYTPLETRKYICRAANAVRVLSTLGFIITLESIKGVIDLSVSANLDIND
MLGSEFCVMVAEKEAERRNSDKGKVLI
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgatacaaatgcttattcctcatttaaaattgaaaacccaaaaccctatttctttcctt
caaaccccttttctttctttagcacaccctctttactcttcacacccctccgtcatcacc
ttcctcctattgtttctttctcgctccaccttccattgttgctgtgtgaacatggatata
gagacgagacggattcaattacagttcaatcaaactcagaagctccgtctgcaaaaggct
atggaatctctatcttctaatgtgaatttcgatgcttcagtcaccatagccgattccatt
cctgtcaactttgaagaaggagtactcaaaggacacggaactgctgacctagacggtgaa
gtcgtttccactctctgcggcactgtggagcgtgttaacaaactcgtttatgtgcgtcct
ttgagctcaaggtacaaacctgaggttggtgacatcgttatagggcgcgttgttgaggtt
gctcaaaagcattggagattggatatcaattgcagtaaaaatgcttatttgatgatttct
gctatgaatgtgcttgatggtgtacagaggcgaaggacgtcaggagatgagttgaatatg
caatgtatttttgcggaggatgattacatttgtgctgaagttcgtgattttacgcatggt
gacatacaccttcaaacaagaagtcaaaaacatggaaagcttactagtggtcagttgctt
acagtcgcaccgtatttagtgaagagacaaaaacaacatttccatcatctggatcaatat
ggtattgatttaataatcggctgtaatgggttcatatgggttggggaacatgttggagtc
agagatgacatggttgaagaccaagttaaccgatctgagccaaacgtttcagttccgaat
aaaagttcagcgagtcttgaagaacaagagaaaaactatacgccactggagactagaaaa
tacatatgccgggctgcaaatgctgtaagagtattgtccactctagggttcatcataaca
ttggaaagtatcaagggtgttatcgatctaagtgtttcggctaatcttgatataaacgac
atgcttggttctgagttctgtgtcatggttgctgaaaaagaggcagagaggagaaactca
gataaagggaaggttttgatataa
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