Pseudomonas savastanoi pv. savastanoi: PSA3335_02670
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Entry
PSA3335_02670 CDS
T07948
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
psav
Pseudomonas savastanoi pv. savastanoi
Pathway
psav02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psav00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PSA3335_02670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psav03021
]
PSA3335_02670
Transcription machinery [BR:
psav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PSA3335_02670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
ARD10076
UniProt:
A0ABC8B7G3
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Position
complement(613481..615331)
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AA seq
616 aa
AA seq
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MSGKAQQQSRIKELITLGREQKYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGIPVHES
APDADALMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTSEGGRLSDVLSGYIDPDDGIAPPAEV
PPPVDPKAVKAEGTDDDEEESADASDDEDEVESGPDPVIAQQRFGAVSDQMEITRKALKK
FGRDDKHAIAEMVALAELFMPIKLVPKQFEGLVERVRGALERLRAQERAIMQLCVRDARM
PRADFLRQFPGNEVDESWTDALAKGKSKYAEAIGRLQPDIQRCQQKLSALEEETGLKIAE
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcaatctcgtatcaaagagttgatcaccctgggtcgtgag
cagaagtatctgacttacgcagaggtcaacgaccacttgcctgaggatatttcagatccc
gagcaggtggaagacatcatccgcatgatcaacgacatggggatcccggtacacgagagt
gctccggatgcggacgccttgatgctggccgacgccgataccgacgaggcagccgcagaa
gaagcggctgcagcgttggcagcggtcgagaccgacatcgggcgtaccaccgatcccgtt
cgtatgtacatgcgtgaaatgggtaccgttgaacttctgacccgtgaaggcgaaatcgaa
atcgccaaacgtatcgaagaaggcatccgtgaagtgatgggcgcaattgcgcacttccct
ggcacggttgaccatattctttccgaatacacacgtgtcaccagtgaaggcggtcgcctc
tccgatgttctgagcggctatatcgacccggacgacggcattgcgccgcctgccgaagta
cctccgcctgtcgatcccaaagccgtcaaggccgaaggcaccgatgacgacgaggaagaa
tcggcagacgccagcgacgacgaagacgaagtcgaaagcggtcccgatccggtcatcgcc
cagcagcgcttcggtgcggtttccgatcaaatggaaatcacccgcaaggcgctgaagaaa
ttcggtcgcgacgacaagcatgccattgccgaaatggttgcacttgccgaactgttcatg
ccgatcaaactggttccaaagcagtttgaaggtctggtagagcgtgtgcggggtgccctt
gagcgtcttcgtgctcaggaacgcgccatcatgcagctttgtgtacgtgatgcacgtatg
ccgcgcgccgacttccttcgccagttcccgggcaacgaagttgacgaaagctggactgac
gcactggccaagggcaagagcaaatacgccgaagccattggtcgtctgcagcctgacatc
cagcgttgccagcagaagctgtcggcattggaagaagaaaccggcctgaaaatagccgag
atcaaggacatcaaccgtcgcatgtcgatcggtgaggccaaggcccgccgcgcgaagaaa
gagatggttgaagcgaacttgcgtctggttatctccatcgccaagaagtacaccaaccgt
ggtctgcaattcctcgatctgatccaggaaggcaacatcggcttgatgaaggctgtggac
aagttcgaataccgtcgtggctacaaattctcgacctatgccacctggtggatccgtcag
gcgatcactcgctcgattgccgaccaggcccgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagctcaaccgtatttcccggcagatgctgcaggaaatgggtcgcgaa
ccgaccccggaagagttgggcgaacgcatggaaatgcctgaggataaaatccgcaaggta
ttgaagatcgcaaaagagccgatctccatggaaaccccgatcggagacgacgaagattcg
catctgggtgacttcatcgaagactcgaccatgcagtcgccaatcgatgtcgccactgtt
gaaagcctgaaagaagcgacacgcgaagtgctgtcgggccttaccgcccgtgaagcaaaa
gttctgcgcatgcgtttcggcatcgacatgaataccgatcacacgcttgaagaggtcggt
aagcagtttgacgttacccgcgagcggattcgtcagatagaagccaaggcactgcgcaag
ctgcgtcacccgacaagaagcgagcacctgcgctcgttcctcgacgagtaa
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