Pseudomonas savastanoi pv. savastanoi: PSA3335_03245
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Entry
PSA3335_03245 CDS
T07948
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psav
Pseudomonas savastanoi pv. savastanoi
Pathway
psav03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psav00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSA3335_03245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psav03021
]
PSA3335_03245
03400 DNA repair and recombination proteins [BR:
psav03400
]
PSA3335_03245
Enzymes [BR:
psav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSA3335_03245
Transcription machinery [BR:
psav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSA3335_03245
DNA repair and recombination proteins [BR:
psav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSA3335_03245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF3150
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
ARD10170
LinkDB
All DBs
Position
718266..722465
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRIHETVNDRDGGSVKNTRIVDTTVGRALLFQVVPAGLSYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMSNLSKEKVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGSIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VGLDGKDLLLPGTDVPAQYFLPANALVGVADGAQIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLSTEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRREMDKPTR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgcaatc
cgtatcggacttgcatcgcctgagatgatccgctcttggtcgtttggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggtctgttctgcgccaag
atctttggcccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaagcac
cgtggtgtcatctgcgaaaaatgcggtgttgaagtagcactggccaaggttcgtcgcgag
cgcatggctcacatcgagctggcttcgccggttgctcacatctggttcctaaaatcgctg
ccgtcccgtatcggtttgctgatggacatgaccctgcgtgatatcgaacgtgttctctac
ttcgagagctatgtcgttatcgatccaggcatgactacccttgaaaaaggtcagctgctg
aacgacgagcaatacttcgaagccctcgaagagttcggtgatgacttcgacgcccgcatg
ggtgccgaggctgtccgcgaactgctgcacgctattgatctggagcacgaaattggccgt
ctgcgtgaagaaattccgcaaaccaattccgaaaccaaaatcaagaagctgtccaagcgt
ctgaaattgatggaagccttccagggttccggcaacctccctgagtggatggtgctgacc
gttctgccggttctaccgccagatctgcgtcctctggttccgcttgacggtggccgtttc
gcgacgtccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgtctgaag
cgtctgctggatctgtctgctcccgacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgatgcgctgctcgacaacggtcgtcgcggtcgtgcgatcacgggttcgaac
aagcgtcctctgaagtccctggctgacatgatcaagggtaagcagggtcgtttccgtcag
aacttgctcggtaagcgcgttgactactcgggccgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaaaaaaatggctctcgagctgttcaagccgttc
atcttcggcaagctggaaatgcgtggcctggccacgactatcaaagctgccaagaagatg
gtcgagcgcgagctgccagaggtctgggacgttcttgctgaagtaattcgcgaacacccg
gtgcttctgaaccgcgcgccaacgcttcaccgtctgggcatccaggcgtttgaaccagta
ctgatcgaaggtaaggctattcagctgcacccgctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccagatggccgttcacgtacctttgacgctggaagcccagctcgaagcg
cgtgcactgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccttcgcaggacgttgtactgggtctgtattacatgactcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgtttgcggacctgcaggaagtcgaccgcgtattccgcgccggc
gaagcggctctgcatgccaaggtcaaggttcgtatccacgaaacggtcaacgaccgtgac
ggtggcagcgtcaagaacacccgtatcgtcgacaccactgtcggccgtgcgctgctgttc
caggtggttccggccggcctgtcctacgacgtcgtcaaccagcctatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtttgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggttttgcctactcgaccatttcgggtgtttccatcggc
gttaacgacttcgttatcccggatgaaaaagctcgcatcatcgacgcggccaccgaagaa
gttaaagagatcgaaagtcagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtgatcgacctctggtccaaggccaacgacgaagtgtccaaggcaatgatgtcgaac
ctctcgaaagagaaggtcatcgatcgtcatggcgtcgaagttgaccaggaatccttcaac
tcgatgtacatgatggctgactccggtgcgcgtggttctgctgcccagattcgtcagttg
gctggtatgcgtggtctgatggccaagcctgacggctccatcatcgaaacgccgattact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctccactcacggtgctcgt
aagggtcttgcggataccgcactgaaaaccgctaactccggttatctgactcgccgtctg
gtagacgttgctcaggatctggtcgttaccgaggtggattgcggtaccgagcacggtctg
ctgatgactccgcacattgaaggcggtgacgttgtagagccgctgggtgagcgcgtactg
ggtcgggttatcgcccgtgacgtgttcaagccgggcacagaagacgtcatcgttcctgct
ggtacactggtagacgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
atcgttcgctcgccaatcagctgtgaaacgcgctacggcatctgtgccaagtgctacggt
cgcgacctggctcgcggtcaccaggttaacatcggtgaagctgtcggcgtaatcgctgca
cagtcgatcggtgagccgggtacccagctgacaatgcgtacgttccacattggtggtgcg
gcaagccggacctcggcagccgacagcgttcaggtgaagaatggcggtactgtccgtctt
cacaacctgaagcacgttgagcgtgttgacggtcacctggttgcggtatcccgctccggt
gaactggccatcgctgatgacttcggtcgcgagcgtgagcgttacaagctgccatacggt
gcagtgatttcggtgaaggaaggcgacaaggtcgacgctggttcgatcgtggccaagtgg
gatccgcacactcacccaatcgttaccgagatgaaaggtactgttacctacgtcggcatg
gaagaaggcatcacgatcaagcgtcagacagacgaattgaccggtatgaccaacattgaa
gtgcttgacgccaaagaccgtccggctgccggcaaggacatccgtcctgctgtgaagatg
gtcggtctggatggcaaggatctgctgttgccgggtactgacgtacctgctcagtacttc
ctgccggcaaacgccctggtcggtgtggctgacggtgcgcagatcgcgatcggtgatgtt
atcgcacgtattccgcaggaaacttcgaagactcgtgacatcaccggtggtctgccgcgt
gttgccgacctgttcgaagcccgtcgtccgaaagaggcgtcgatccttgcagaagtcagc
ggtaccatcgcattcggtaaagagaccaagggcaagcgccgtctggtcattaccccgaac
gacggtagcgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagttatctccgacggtcctagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgtcaacgagattcaggatgta
taccgcctgcaaggcgtgaagatcaacgacaagcacatcgagacgattctgcgtcagatg
ttgcgcaaggttgaaattgccgagtctggcgattccagtttcatcaagggcgaccagatg
gaattgactcacgtactggtagaaaacgagcgtctgagcacggaagacaagtttgtctcc
aagttcactcgcgtgttgctgggtatcaccaaggcatcgctgtccaccgagtcgttcatc
tccgcggcctccttccaggagacaacccgcgtgctgaccgaggcggctgtgactggcaag
cgcgattatctgcgcggcctgaaggaaaacgtggttgtgggtcgtctgatcccggccggt
accggtctggcttatcacagcgagcgcaagcgtcgtcgtgaaatggacaaaccgacccgt
gtcagcgcgagcgaagtagaagccgctctgactgaagcgttgaactccagcggtaattga
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integrated database retrieval system
