Pseudomonas savastanoi pv. savastanoi: PSA3335_05155
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Entry
PSA3335_05155 CDS
T07948
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
psav
Pseudomonas savastanoi pv. savastanoi
Pathway
psav02020
Two-component system
psav02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psav00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PSA3335_05155
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PSA3335_05155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psav03021
]
PSA3335_05155
Transcription machinery [BR:
psav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PSA3335_05155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
CCDC14
HTH_IclR
TrmO_C
HTH_21
Motif
Other DBs
NCBI-ProteinID:
ARD10507
LinkDB
All DBs
Position
complement(1123690..1125183)
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AA seq
497 aa
AA seq
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MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNSD
PLADNIEQKPNPDVQEPTYQESAPTVDNLEDGEWNERIPNELPVDTAWEDIYQTSASSLP
SNDDDEWDFTTRTSAGESLQSHLLWQLNVAPMSDKDRLVAVTLIDCINNQGYLDETLEEI
LESFDPELDIELDEIEAVLHRIQQFEPAGIGARNLSECLLLQLRQLPAKTPWLMEAQRLV
TDYIDLLGSRDYGQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEAEYVIPDVIVRK
DNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL
MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK
YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLM
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctagtcttgagaatgggccagcagctgacgatgacaccgcagctgcaa
caggcaatccgcttactccagctttccacactggacctccagcaggagatccaggaggcg
ctggaatcgaaccccatgctggaacggcaggaagaaggcgacgacttcgacaactccgac
ccgcttgccgacaacatcgaacaaaagcccaaccccgacgttcaggaaccgacctaccag
gaatccgcgcctaccgtggataaccttgaagacggcgaatggaacgagcgcattcccaac
gaactgcccgtcgataccgcatgggaagacatctaccagaccagcgccagcagcctgcca
agcaacgatgatgacgagtgggacttcaccacacgcacatctgcaggcgaaagcctgcaa
agccacctgctgtggcaattgaacgtcgccccgatgtccgacaaggaccgcctggtggcg
gttacgctgatcgactgcatcaacaaccagggctatctggacgaaaccctcgaggagatt
ctcgagtctttcgatcccgagctggacatcgaactcgacgaaatcgaagccgtactgcac
cgcatccagcagtttgagccggcaggcatcggcgcccgaaacctgagcgaatgcctgctc
ctgcagcttcgccagttgccagccaaaacaccttggctgatggaagcgcaacggttggtc
accgactacatcgacctgctgggaagtcgcgattacggccagttgatgcggcgcatgaag
ctcaaggaagacgagctgcgccaggtcatcgagctggtccagagcctcaacccgcgccct
ggctcacaaatcgaatccacagaagccgagtacgtcattcccgatgtaatcgtgcgcaag
gacaacgagcgctggctggtcgagctcaatcaggagtccgtaccgcgcctgcgcgtcaat
ccgcaatacgcaggttttgtacgccgggccgataccagcgcagacaacaccttcatgcgc
aatcagttgcaagaggcgcgctggttcatcaagagcctgcaaagccgcaacgagacactg
atgaaggtcgccacccagatcgtcgaacatcagcgcggctttcttgagtacggcgacgag
gcgatgaagccgcttgtcctgcacgacattgccgaggcagtgggcatgcatgaatcgacc
atctcgcgcgtgaccacccagaagttcatgcacacgccacgcggcatttacgagctgaaa
tacttcttctcgagccatgtgagcacttccgagggcggtgaatgctcgtccacggcaatt
cgcgcaatcatcaaaaaactggttgcggcggaaaatcagaaaaagccgttgagtgatagc
aagatcgctggtttactggaggcacaaggcattcaagtagcccgtcgcacagtcgccaag
taccgcgagtcactcgggatagcgccttccagtgagcgtaagcggctgatgtga
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