Pseudomonas savastanoi pv. savastanoi: PSA3335_12800
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Entry
PSA3335_12800 CDS
T07948
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psav
Pseudomonas savastanoi pv. savastanoi
Brite
KEGG Orthology (KO) [BR:
psav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psav03032
]
PSA3335_12800
03400 DNA repair and recombination proteins [BR:
psav03400
]
PSA3335_12800
Enzymes [BR:
psav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PSA3335_12800
DNA replication proteins [BR:
psav03032
]
Prokaryotic type
DNA Topoisomerases
PSA3335_12800
DNA repair and recombination proteins [BR:
psav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PSA3335_12800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
ARD11882
UniProt:
A0ABC8BD52
LinkDB
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Position
2790838..2793450
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AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASAAKDPAAKRGKAAAGE
GPVLTPKEKAQRQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRKLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIARVNAQQARRFLDR
VVGYMVSPLLWQKVARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEIHADLGTAKGAN
GRFEVARENGEAFKPLNETQAMVALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVSMARDYIETEFGKKYLPESPN
VYSSKEGAQEAHEAIRPSDVNTHPSKLAGMERDAERLYELIWRQFVACQMLPAQYLSTTV
TVAASDFELRAKGRILKFDGYTRALPQMAKPGDDDVLPDMAQGEALKLNKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTGRLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKSVLDEFYGDFRKKLDVAEAADGGMRANQPVMT
DIPCKVCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLTPGDEIADDDEGESESRVL
RGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCTGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPECKNTRKLLKSGDAAPPKMDPVKMPELKCDKVDDTYILRDGA
SGLFLAASQFPKNRETRAPLVIEIAPHKDEIDPKYHFLCEAPKKDPDGRPTVIRYSRKTK
EQYVQTEVEGKPTGWRAFYDGSAWKVEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcatcgtggaatccccggctaaggccaagaccatcaacaagtat
ttgggcaaccagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagtgccgccaaagaccctgccgccaagcgtggcaaggctgctgcgggcgag
ggcccggtactgacgcctaaagaaaaggcgcagcgccagctggtctcgcgcatgggagtc
gatccggaacatggctggaaggccaagtacgagatccttcctggcaaggaaaaggtcatt
gaagagctgcgcaagctcgccaaggatgccgacaccatctatctcgcgacggacttggac
cgcgaaggggaagccattgcctggcacctgcgcgaagccatcggcggggatgacagccgc
tacaagcgcgtggtgttcaacgagatcaccaagaaagccattcaggaagcgttttccaag
ccaggcgagctggacattgcccgggtcaacgctcagcaggcgcgtcgtttccttgaccgc
gtcgtaggctacatggtctcgccgctgctctggcagaaagtggcccgtggtttgtctgcc
ggtcgtgtgcagtcggttgcggtgaagctggtggtggagcgtgagcgtgaaattcgcgcg
ttcaaccctgaagaatactgggaaatccacgccgatctgggcaccgccaaaggcgccaat
gggcggttcgaagtggcgcgtgaaaacggcgaagcgttcaaaccgctgaacgaaacccag
gccatggtagcccttgaaaagctcaaggcgtccagctacagcatcgtcaagcgtgaagac
aagccgaccagcagcaagccctcggcgccgttcatcacctcgaccctgcagcaggcggcg
agcaatcgcctgggcttcggcgtcaagaagaccatgatgatggcacagcgcttgtatgag
gctggctacatcacttatatgcgtaccgactcgaccaatctatcggccgacgcggtaagc
atggcgcgtgactacatcgaaaccgagttcggcaagaagtacctgccggaatcgcctaac
gtctacagcagcaaggaaggcgcgcaagaggctcacgaagcgattcgaccttccgacgtc
aacacccacccgagcaagcttgccgggatggagcgtgacgccgagcgcctttacgagttg
atctggcgtcagttcgtggcttgccagatgctgcctgcacaatacctgtcgaccactgtc
acggtcgccgcaagcgacttcgagctgcgcgccaagggccgcatcctcaagttcgacggc
tatacccgtgcgttgccacagatggccaagccgggcgatgacgacgttttgccggacatg
gcgcagggcgaagcgctgaagctgaacaagctcgaccccagccagcacttcaccaagccg
ccagcgcgttattccgaagccagtctggtcaaggaaatggaaaagcgcggtatcggtcgc
ccgtcgacctacgccgcgatcatttcgaccattcaggaccgtggctacgtggcgctgcac
aatcgccgcttttactcggaaaaaatgggtgacatcgtcaccggacgtctgtccgaaagc
ttttccaacctgatggactatggctttaccgccgggatggaagaaaacctcgacgacgtg
gctcagggtgagcgcgactggaaaagcgtcctggacgagttctacggtgatttccgtaaa
aagctcgacgtggccgaggccgctgatggcggcatgcgtgccaaccagccggtgatgacc
gatatcccgtgcaaggtatgcggccgcccgatgcagattcgcaccgcctcgacgggtgtg
tttctggggtgctccggctacagcctgccgcccaaggaacgctgcaaggcgactgtcaat
ctgacccccggcgacgaaattgccgacgatgacgagggcgagtccgagtcgcgggttctg
cgcgggaaacatcgctgcccgatctgtagcacggcgatggacgcgtatctgctcgacgaa
aagcacaaactgcacatatgcggcaacaaccccgattgcacaggttacgagatcgaggaa
ggcacttaccggatcaaaggctacgaaggcccgagtctggaatgcgacaagtgcggcagc
gaaatgcagctcaagaccggtcgtttcggcaagttcttcggctgtaccaatccggagtgc
aagaacacccgcaagctgctgaaaagcggcgacgcagcaccaccgaagatggacccggtg
aagatgccggagctcaagtgcgacaaggtcgacgacacctacattctgcgtgacggcgct
tcgggcctgttcctggctgccagccagttcccgaaaaaccgtgaaacccgtgccccgctg
gttatcgagatcgcgccgcacaaggacgaaatcgatcccaagtaccacttcctttgcgaa
gcgccgaagaaggatccggacggtcgtccaacagtgatccgttacagtcgcaagaccaaa
gagcagtatgtccagaccgaagtagagggcaagcctacgggctggcgtgcgttctacgac
ggcagcgcctggaaggttgaagacaagcgttga
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