Pseudomonas savastanoi pv. savastanoi: PSA3335_20585
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Entry
PSA3335_20585 CDS
T07948
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psav
Pseudomonas savastanoi pv. savastanoi
Pathway
psav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSA3335_20585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psav03019
]
PSA3335_20585
03009 Ribosome biogenesis [BR:
psav03009
]
PSA3335_20585
Enzymes [BR:
psav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PSA3335_20585
Messenger RNA biogenesis [BR:
psav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSA3335_20585
Ribosome biogenesis [BR:
psav03009
]
Prokaryotic type
rRNA processing factors
PSA3335_20585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
ARD13239
UniProt:
A0ABC8BH41
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All DBs
Position
4521331..4524663
Genome browser
AA seq
1110 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRES
LEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQ
RLRDDSPEAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEA
VAPAPTPAPVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQ
QSRGRNNRRDEERKPREERAPREERAERAPREERAPREERAPREERAPREERTVREPREA
REDSTPREERPARTSRERKPREAREDRPVRELREPLDAAPAVNLAREERPERAPREERQP
RAPREERQPRAEQAAAAVSEEEVLLNEEQINDENQEGNDGSEGDRPRRRSRGQRRRSNRR
ERQRDANGNVIEGSEENGSEENGSAENTEEGSSATDLSAGLGFTAAAAAGGVISATAEAD
AHQQAERANSTAVDAPAVEPAQQAPVAEATAAKAPEADAPAIEASTPETPVAAEPVVEVP
AVEAPVADNAPVAKPAPEVEVQPAAVEAPAIAAQTELFEAPHAERVVPFTPTPEPAPQAP
VEAAAHEEVPATESSELPTPATPAAEPVVVKEEPAPYVAPQAIEEAAPAPAEQQPVVVET
PAAPVSSTGRAPNDPREVRRRKREEEARRQQEAAAASTPVIAEAAPVAAEAESVQPSQAI
EEKTEEAATEQPAVKPQHEAEKENEPKPLV
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagacggccagcgc
ctctacgacctggacatcgagtcaggtgcacgcgagcagaagaaggccaacatctataaa
ggccgaatcactcgcattgaacccagccttgaggctgcctttgtcgatttcggctctgag
cgccacggctttctgcccctcaaggaaatctcccgcgagtacttcaagaaagcccctgaa
ggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgttcaggtcgag
aaagaagagcgtggcaacaagggcgcagccctgaccaccttcatcagccttgcaggccgc
tatctggtcctgatgccgaacaaccctcgcgccggtggcatctcgcgccgtatcgaaggc
gaagagcgcaacgaactgcgtgaagccctcaacggcctgatcgctccagccgacatgggt
ctgatcgttcgtactgccggcctgggccgcagcagcgaagaaatgcagtgggacctcgat
tacctgctgcaactgtggaccgccatcaaggaagcgtccctggaccgttcggcccctttc
ctgatctatcaggaaagcaacgtcatcatccgtgccatccgtgactacctgcgtcaggat
atcggcgaagtcctgatcgacagcgtcgaagcccaggaagaagccctgaccttcatccgc
caggtgatgccgcagtacgccagcaagatcaaactgtacgaagacagcgttccactgttc
aaccgcttccagatcgaaagccagatcgaaaccgccttccagcgcgtggtcgaactgcct
tccggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgacatcaactcg
gcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaaccttgaagcg
gctgaggaaatcgcccgtcaattgcgtctgcgcgacatcggcggcctgatcgtgatcgac
ttcatcgacatgacaccggccaagaaccagcgcgcggtggaagaaaaagtccgcgaaagc
ctggaagccgaccgcgcccgcgtgcagatcggtcgcatttcgcgcttcggtctgctggaa
atgtcccgtcagcgcctgcgtccatcgctgggcgaaagcagcggcatcgtctgccctcgc
tgcaacggcaccggcatcatccgtgatgttgaatcgctgtcgctggccatcctgcgcctg
atcgaagaagaagccctgaaagaccgcactgccgaagtgcgcgctcaggtgccgattccg
gtcgcggctttcctgctcaacgaaaaacgcaattcgatcaccaagatcgagctgcgcacc
cgtgcgcgcatcatcatcctgccgaacgaccagctggaaaccccgcacttcgaagttcag
cgtctgcgtgatgacagcccggaagcacacaacagccagaccagctacgaaatcgccgcg
gctgcagccgaagtggaagaaatcgccccgctggctgccgcaacccgcactcttgttcgc
caggaagcagccgtcaagactgcacctgctcgtgccaatgcgccggttccggtagaagcc
gttgcgcctgccccaacgcctgcaccggtcgctcacgagccaagcctgttcaagggcctg
gtgaaatccctggtcagcctgtttgcgaccaaggaagagcctgccgctccggtagtggtt
gaaaaacctgctgccgaacagcgtccggcccgtaacgaggagcgccgcaacggtcgccaa
cagagccgtggccgcaacaaccgtcgtgacgaagagcgcaagcctcgtgaagaacgcgcc
ccccgtgaagaacgtgccgaacgcgcgccgcgcgaagagcgcgccccacgtgaggagcgt
gcacctcgtgaagaacgcgcacctcgtgaagagcgtaccgttcgcgaaccgcgtgaagcc
cgcgaggattcaacaccacgtgaagagcgtccagcccgtacttcccgcgagcgcaagcca
cgtgaagcacgcgaagatcgtccggtccgcgaactgcgcgagcctctggatgcagcccct
gccgtaaaccttgctcgtgaagagcgtcctgaacgcgcaccgcgcgaagaacgccagccg
cgcgcacctcgcgaagaacgtcaaccacgcgccgaacaggccgcggctgccgtgagcgaa
gaggaagtgctgctcaacgaagagcagatcaatgacgagaaccaggaaggcaacgacggt
agcgaaggcgaccgccctcgccgccgctcccgcggtcagcgtcgtcgcagcaaccgtcgt
gagcgtcaacgtgatgccaatggcaacgtgatcgaaggctctgaagaaaacggttccgaa
gaaaacggctcggcagaaaatactgaagaaggcagcagtgccaccgatctgtcggctggc
ctgggattcaccgcagcagctgcggctggcggcgtgatcagcgccacagcagaagccgat
gcacaccagcaggccgagcgggccaacagcactgctgtagacgctccagccgtagagccc
gcgcagcaagcgcctgttgccgaagcaactgctgccaaggcaccggaagctgacgcaccg
gcaattgaagcatccactccagaaactccggtagcagcagaaccggtcgttgaagtgcct
gccgttgaagcgccggttgcggataatgcgccagtcgccaaaccggctccggaagtagag
gttcaacctgctgcggtcgaagcacctgccattgccgcgcagaccgagctgttcgaagcg
ccgcatgcagagcgcgtcgtgccgttcacaccaacgccagagccagcgccacaagcgccg
gtcgaagcagcggcccatgaagaagtgccagccactgaatcgtccgaactgccaacgcct
gctactcctgctgccgagcctgtcgtcgtgaaggaggagcctgctccttacgtcgcgcct
caggccatcgaggaagcagcgcctgcacctgcagagcaacaacctgtggtcgtggaaaca
ccggcagcaccggtcagcagcaccggccgtgcaccgaacgatcctcgtgaagttcgtcgt
cgcaagcgtgaagaagaagcacgccgtcagcaggaagccgctgctgccagcactccagtc
atcgccgaagcagcacctgttgccgctgaagcagaatcggtccagccttctcaggctatc
gaggaaaagactgaagaagcggcgactgagcaaccagcagtcaaaccgcaacatgaagcc
gagaaagaaaacgagcctaaaccactcgtttaa
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