Pseudomonas savastanoi pv. savastanoi: PSA3335_22070
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Entry
PSA3335_22070 CDS
T07948
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psav
Pseudomonas savastanoi pv. savastanoi
Pathway
psav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSA3335_22070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psav03019
]
PSA3335_22070
03009 Ribosome biogenesis [BR:
psav03009
]
PSA3335_22070
Enzymes [BR:
psav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSA3335_22070
Messenger RNA biogenesis [BR:
psav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSA3335_22070
Ribosome biogenesis [BR:
psav03009
]
Prokaryotic type
rRNA helicases
PSA3335_22070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
ARD13495
UniProt:
A0ABC8BGW9
LinkDB
All DBs
Position
complement(4823732..4825411)
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AA seq
559 aa
AA seq
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MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALTLAAIERERPLVPNNAPRGDRPERSGSSDRGDRPERERRAPVPLAE
GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTK
LKDTRVAGKQLKLRRYRED
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctctcgaacttcatccaaatatcgttgcagca
gtcgtcgccactggctacgaagagccttcggccattcagcagcaatcgatcccgattatt
ctcgccggtcacgacatgattggtcaggcgcaaaccggtacgggtaaaactgccgcgttc
gcactgcctatcctgcatcgcatcgacccgagcaagcgcgagccgcaagcactgatcctg
gccccgacccgcgaactggcacttcaggttgccaccgcgttcgagacctacgccaaacaa
atgccgggcgtgaccgttgtagcggtctacggcggcgcgccaatgggcccgcagctcaag
gccatccgcaacggcgcacaaatcgttgtcgccaccccgggccgtctctgcgaccacctg
cgtcgtgacgagaaagtcctggcaaccgtgaaccatctggttctcgatgaagcggacgaa
atgctcaagctgggcttcatggacgacctcgaagtcatcttcaaggccatgcctgaaacc
cgccagaccgtactgttctcggcaacgctgccacagtcgatccgtgccatcgccgagcgc
catctgcgcgatccgaagcacgtcaagatccagaccaagacccagaccgttaccgcgatc
gagcaggctcacctgctggttcacgctgaccagaagacctccgctgtactgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtccgcaccaagcaggcgaccctggac
ctggcaagcgcccttgaagccaaaggctacaaggctgctgcactgaacggtgacatcgct
cagaaccagcgcgagcgcgttatcgattccctcaaggatggccgtctggacatcgttgta
gcgaccgacgttgctgcccgtggtcttgacgttccgcgtatcacccacgtattcaacgtg
gacatgccttacgatccagagtcctacgttcaccgtatcggccgtaccggtcgtgccggt
cgcgaaggtcgtgcactgctgctggtaactcctcgcgagcgccgtatgctgcaggtgatc
gagcgtgtaaccggtcagaaggttgctgaagtccgcctgccggatgcccaggccgttctg
gatgcccgcatcaagaaactgaccaacagcctgtcgccactggttgccgatgccgaatcg
actcatggcgatctcctggatcgtctgactgccgacatcggttgcagcccgcgtgccctt
gctgctgcactgctgcgcaaggctaccaacggtcaggctctgaccctggcagccatcgag
cgcgagcgcccgctggttccgaacaacgcccctcgcggtgatcgtccagagcgtagcggc
agcagcgatcgcggtgatcgtcctgagcgtgagcgtcgtgcgccggtcccgctggccgaa
ggtcgtgctcgttgccgtaccgcgctgggtgcgcgtgatggtatcgctgccaagaacctg
ctgggtgccattctcaacgaaggcggcctggcccgcgaagctatcggccgcatccaggtg
cgtgacagcttcagcctggtcgagctgccggaagatggtcttgagcgtctgctgaccaag
ctcaaggacacccgtgttgctggcaagcagctcaagctgcgtcgctatcgcgaagactga
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