Pseudoalteromonas sp. A25: PA25_03250
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Entry
PA25_03250 CDS
T07990
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psaz
Pseudoalteromonas sp. A25
Pathway
psaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PA25_03250 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psaz03019
]
PA25_03250 (rhlE)
Enzymes [BR:
psaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PA25_03250 (rhlE)
Messenger RNA biogenesis [BR:
psaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PA25_03250 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
BBN80340
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All DBs
Position
1:365286..366665
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AA seq
459 aa
AA seq
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MTFSDLGLSPAIVQTINEKGYSEPTPIQAKGIPAVLSGRDVMAAAQTGTGKTAAFTLPII
EQLLAHERPRANQALALVLAPTRELALQIAENVEAYSQGTRLRSAVVYGGVKINPQMMQL
RKGVDILIATPGRLLDLHNQNAVKFNQLTTLVLDEADRMLDMGFIHDIKKIIKALPKQRQ
NLLFSATFSEPIQELAKGLIVDPIEISVTPKNAASKTVTQCVYGIDKAKKTKLLSHLIRS
KKWQQVLVFCRTKHGANRLVTQLERDKIAGAAIHGNKSQSARVKALNGFKSGEISVLVAT
DIVARGLDIAELPYVVNYDLPNVYEDYVHRIGRTGRAGSDGFAVSFVTIDDADDLYGIER
FIGALIPRAQEPGFEAQHPVPEKALDTRPIKQKKPKKPKVRKEHQAVDHGKLQQTSSAKK
AKPNSANKVKQQRVKAAIDNPTNAKPKRRRFKPKPANTP
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgacattttctgatttggggttatctcccgctattgttcaaacaattaatgaaaaaggc
tacagtgagccgacacctatccaagcaaaagggatccctgcggttttaagcggacgagat
gtaatggctgctgcgcaaacgggaacgggtaaaacagctgcctttacattaccaattatt
gagcaattgttggcgcatgagcgtcctcgagcaaaccaagccttggctttagtgttagcg
ccaacaagagagctcgctctgcaaatagcggaaaacgtagaagcatacagtcaaggtacg
cgcttgcgctctgctgtggtatatggaggggtgaaaatcaacccgcaaatgatgcagctt
cgcaaaggcgtagatattctcattgcaacacctgggcgcttacttgatttgcataaccaa
aatgcggttaaatttaaccaattgaccactttggtattagatgaagctgaccgtatgtta
gatatgggctttattcatgacattaaaaaaattattaaagcactgcccaagcagcgtcaa
aacttattattctcagctactttttcagaaccaattcaagagcttgctaaaggcttgatc
gttgatccgatagagatctcggtaacacccaaaaatgccgcatctaaaacagtaacgcag
tgtgtttacggtattgataaagctaagaaaaccaaattgttgagccacctgatccgtagt
aaaaagtggcaacaagttttggtgttttgtcgtacaaagcatggtgctaaccgattagtt
acccagcttgagagagacaaaatcgcgggtgcagcgattcatggtaataaatcgcaatcg
gcgagggttaaagcgctcaatggctttaaatcgggtgaaatatcagtactggttgccacc
gatattgtagctagggggctggatattgctgagttaccatatgttgttaactatgacttg
ccgaatgtgtatgaagattatgtgcatcgtattggtagaacagggcgtgctggcagtgat
gggtttgcggtgtcttttgtaacgattgatgatgcggatgatttatatggtatagagcga
tttattggtgccttgatcccaagagcgcaagagccgggttttgaagcgcaacacccagta
ccagaaaaggcactagatacgcgtccaattaaacaaaaaaaacctaaaaagccgaaggtg
cgcaaagagcatcaagctgttgatcacggtaagctccaacaaacttccagtgcgaaaaaa
gcgaaaccaaactctgcaaacaaggttaaacagcaacgtgttaaagcggcgattgacaat
ccaaccaatgctaagccaaagcgtcgtcgttttaagccaaaacctgcgaatacaccctaa
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