Pseudoalteromonas sp. A25: PA25_10170
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Entry
PA25_10170 CDS
T07990
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
psaz
Pseudoalteromonas sp. A25
Brite
KEGG Orthology (KO) [BR:
psaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psaz03009
]
PA25_10170 (rlmD)
Enzymes [BR:
psaz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PA25_10170 (rlmD)
Ribosome biogenesis [BR:
psaz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PA25_10170 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
TRAM
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_11
PrmA
Methyltransf_4
PCMT
Cons_hypoth95
Methyltransf_23
DOT1
TehB
RrnaAD
Methyltransf_12
TPMT
CMAS
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
BBN81032
UniProt:
A0A5H2Y8P8
LinkDB
All DBs
Position
1:1184429..1185736
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AA seq
435 aa
AA seq
DB search
MAQFFKAKAPSSKGKNLELTIESIDHQGRGVAKYQGKVCFVDGALANEHVKAQIQQEKAK
LIIAKTVKVITPSEQRTTAFCQDYARCGGCQLQHLEHQHQLSHKHKALDALFNKFCKVTD
LPWQLPIESEPTHYRRAARIACIFDTASQQLKLGFRGAKSKQIIEIKRCDVLTSPFANIF
THLRDILNRHKAYSCISHIQLCDADNGQYVLFRHTKKITQSFKEELAETLLGYQLLWDDG
SDKVAYPQLPSYQVAKLNFEFKLDNFVQVNRAVNEGMLLQALNWLELSTKDKVLDLFCGI
GNFSLLMAKQANEVIGVEGSQSSVAMAKQNAHTNQLNNARFYCFDLTQPLAKANWFETSL
NVLLLDPSRTGAYEILKQLPLTQFKKVLYVSCDPVTLARDSALLIEAGFELDKIGLMNMF
PHTGHIETMALFQRR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagttttttaaagctaaagcaccatcatcaaagggtaaaaatttagagctgacc
attgagtcgatagatcaccaaggccgaggtgttgcaaagtatcaaggcaaagtgtgcttt
gttgatggggcattggctaatgaacacgttaaagcacaaatacagcaagaaaaggctaaa
ctcatcatagctaaaacagttaaagtcatcacgccaagcgagcaaagaacgacagcattt
tgtcaagactatgcacgttgtggtgggtgtcagttacagcatttagaacaccagcaccag
ctaagtcataagcacaaggcattagatgcgttatttaacaaattttgcaaagtaaccgac
ctgccttggcaattgcctattgaaagtgagccaactcattatcgcagagcggctcgcata
gcctgtatttttgatacagcgtcgcaacaattaaagttgggctttagaggggcaaaaagt
aagcagatcatagaaataaagcggtgtgatgtattaacgtcgccatttgctaacatattt
actcaccttagagacatactgaatagacacaaagcttattcgtgcataagccatatccag
ttgtgtgacgctgataacggtcaatatgtgttatttagacacaccaaaaaaataacccaa
agttttaaagaagagcttgccgaaacactgctaggttaccagctcttgtgggatgatggc
tctgataaagtggcttatcctcaactacctagttatcaggttgctaagctaaattttgaa
tttaagcttgataactttgtgcaagtaaatcgcgcagttaatgaaggtatgttgttacaa
gcactaaactggcttgaattatctacaaaagataaggtgctcgacttattttgcgggata
ggtaatttctcattattgatggcaaaacaagcaaatgaagtaattggtgttgaggggtca
cagtcatcggttgcaatggccaagcaaaatgcgcacactaatcaacttaacaatgcgcga
ttttattgctttgatttaactcagccgttagcgaaagcaaactggtttgagacgtctctg
aatgtattgctacttgatccgtctcgaacaggggcatatgaaatactcaagcaattgcca
ttaacgcagtttaaaaaagttttatacgtgtcgtgcgatccagtgacactggcacgtgat
agcgcattgttgattgaagccggttttgaattagacaaaatagggctaatgaatatgttt
ccgcatacagggcatattgaaactatggcgttgttccaaaggaggtaa
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