Pseudoalteromonas sp. A25: PA25_15110
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Entry
PA25_15110 CDS
T07990
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psaz
Pseudoalteromonas sp. A25
Pathway
psaz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PA25_15110 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psaz03400
]
PA25_15110 (mfd)
Enzymes [BR:
psaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PA25_15110 (mfd)
DNA repair and recombination proteins [BR:
psaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PA25_15110 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
BBN81526
UniProt:
A0A5H2Y2J9
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All DBs
Position
1:complement(1805488..1808976)
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AA seq
1162 aa
AA seq
DB search
MASAHWSELPWVKSPTDKIHWGQLSGSGLSVALSSGIAQHHELVVIVTPDTPSALRLETE
LGYLLPDRSVMVFPDWETLPYDHFSPHQDIISARLASLNALKKQSDSVLIVPVSTLMLRT
APPAFIYGNALKYKVGDIIDAQQLKSALSESGYRHVQQVMEHGEFAVRGSIVDLYPMGSP
HPYRFDFFDDELDSIRLFDIETQRSNDKVAEIDLLPAHEFPTNESDIERFRIAYREAFGA
SSEKDSIYMQVSKGNWPAGIEYYLPLFYEKLATIFDYLPNDATVMHLGGIEHAAHLFWQD
VEKRYENRRVDPLRPLLEPAKLYQPIEELFGNFNRYSRIKLSQAKLGTKAGHTNLSAKPV
EDIRIDHKLTEPYSKILDYITAQKKQQARVLFSVESDGRRESLLTLLKPTGIKLKEFQDF
NEFINSKTDVGLIVSPLEQSVCLSGARELAKPTLSIITEQELLGIKVSQRRRRKHKYEQG
HDALIRNLAELKEGQPIVHLDHGVGRYIGLQTIDAAGIATEFVTISYANDAKLYVPVSAL
HMLSRYSGGEEASAPLHKLGSDVWEKAKRRAAEKVRDVAAELLDIYAKRQSKPGHAFKLD
GSLYREFAQSFPFEETDDQRNAIEAVLADMQSDQAMDRLVCGDVGFGKTEVAMRGAFTAI
NDNKQVAVLVPTTLLAQQHFENFKDRFADLPVEVGVLSRFNSAKEQKDTLDKLASGQIDI
VIGTHKLIQENIKFSDLGLLIVDEEHRFGVRQKEKIKQLRADVDILTLTATPIPRTLNMA
MSGMRDLSIIATPPAKRLAIKTFVKERNDDLIREAILREIKRGGQVYFLHNNVETIEKTA
ADIAELVPEASIAVAHGQMRERELEHLMSDFYHQKHNVLICTTIIETGIDIPTANTIIMD
RADKLGLAQMHQLRGRVGRSHHQAYAYLLTRNTQSLTKDAVKRLQAIESLEDLGAGFALA
THDLEIRGAGELLGDDQSGQIQSIGFNLYMEMLDQAVQALKDGKEPTLDNLLQQHTDVDL
KIPALLPDDYIPDVNMRLSMYKRIASANTPNELDELQVELIDRFGLLPDAAKNLFNVQLL
KQKANHLGISKVEANNKGGYFEFNESTKVNPTFIIALIQSNPRVYKMEGASKLRFAIEEK
NGQERLKLISAMIEDFNKKAVA
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggcctcagcgcattggagcgaactaccttgggtaaaaagcccaaccgataagatccat
tggggccaactcagtggcagtggtttaagtgttgcgctaagttcagggatagcacaacac
catgaattggttgtcatcgttaccccagatacgcctagcgcattgcgcctcgagacagag
cttggctacttattgccagaccgctcagttatggtatttcctgattgggagacattgcca
tatgatcacttctctcctcaccaagatattatttcagcacgattagcatcattaaatgcg
cttaaaaagcaaagtgatagtgtgttaattgtgccagtgtctacgcttatgctgcgtact
gcccctcccgctttcatttacggcaatgccttgaaatataaagtcggagatattatcgac
gcgcagcaacttaagtctgcgctcagtgaatcaggttatagacacgttcaacaagtcatg
gaacacggcgagtttgccgtacgaggctcaattgtggatctttacccaatgggcagtcca
cacccctatcgctttgatttttttgatgacgaattagatagtattcgtttatttgatatt
gaaacacagcgttcaaacgataaagttgcagaaattgaccttttgcctgcacatgagttt
ccaactaatgaatctgatatagagcgttttcgtattgcttatcgcgaggcatttggcgca
agctctgaaaaagactctatttatatgcaggtaagcaaaggaaattggcctgcagggata
gagtactatctaccgttgttttatgaaaagctagcaacgatattcgactatttacccaat
gatgcaactgtaatgcatcttggaggtatagagcatgctgcacatttgttttggcaagat
gttgaaaagcgttacgaaaaccgtcgcgttgacccactaaggccactgcttgaaccggcc
aaactatatcaaccaatcgaagagctatttggtaattttaaccgttattcacgcattaaa
ttgagtcaggcaaaacttggaactaaagccggacataccaacttatcggcaaagcctgtc
gaagatatccgaattgaccataagctaaccgaaccatatagcaaaatccttgactatatt
acggcgcagaaaaagcaacaagcacgcgtactatttagcgttgagtcggatggccgtcgc
gagtcgctgctcactttgttaaaaccaacggggatcaaacttaaagagtttcaagatttc
aatgagtttatcaatagtaagactgatgtcggcctaattgtaagtcctttagaacaaagc
gtatgcttatccggtgctcgcgagttagcaaaacccactttaagcataattactgagcaa
gaattacttggtataaaagtatcgcaacgacgacgcagaaaacacaagtatgagcaaggg
catgatgcactcattcgcaacttggctgagttaaaagaaggccaaccaatcgttcattta
gatcatggtgttggccgttacattggtttgcaaactatcgacgcggcgggtatcgctact
gaatttgttactatttcttatgccaatgatgcaaagctgtatgtaccagtatcggcattg
catatgcttagccgctactctggcggcgaagaagcttcagcgcctttacacaagcttggt
tcggatgtttgggaaaaagccaagcgtcgcgctgctgaaaaggtccgtgatgttgcagct
gagttactagatatttatgccaaacgacaaagtaaacctggccatgcatttaagctagac
ggttcactctatcgcgagttcgcgcagagttttccttttgaagaaacggacgatcagcgc
aatgccattgaggcagtattagccgatatgcaatccgatcaggcaatggataggcttgta
tgtggtgatgttggttttggtaaaacagaagttgcaatgcgcggtgcattcacagcaatc
aatgataataaacaagtggcggtgctcgtgccaacaactttacttgcacaacaacacttt
gaaaacttcaaagataggtttgctgatttacctgttgaggtaggtgtactatcgcgcttt
aacagcgcaaaagagcaaaaagatacactcgacaaactagcaagtggccaaattgatatt
gttattggcacacataaactgatccaagagaacattaagtttagtgatcttggcttactc
attgtggatgaagaacaccgtttcggtgtccgtcaaaaagaaaaaatcaagcagctaaga
gcagatgtcgatatcctaacgctcacggctacaccaattccacgtacgttaaatatggcg
atgagtggtatgcgcgatctgtcgataatcgctaccccacccgcgaagcgcctagcaata
aagacgtttgtaaaagagcgtaacgacgacctcattagagaagctattctgcgtgaaata
aagcgcggcggccaagtttactttttacataataacgttgaaaccattgagaaaaccgcg
gcagacatcgctgaactagtgcccgaagcaagcatagcggtggcgcatgggcaaatgcga
gaaagagagcttgaacacttgatgagtgatttttatcaccaaaagcacaatgtgttgatc
tgtaccacgattatagaaacgggcatcgacattccaacagctaacaccattattatggat
agagcagataaacttggtctagcgcaaatgcaccaattacgtggccgtgtgggccgcagc
catcaccaagcatatgcatatttactgactagaaacacacaaagcttaaccaaagatgct
gtaaagcgcttacaagccattgagtctttagaagatttaggtgcaggctttgcgcttgca
acgcatgacttggagatccgtggtgccggtgagctattgggtgatgaccaaagtggccaa
attcaatctataggtttcaatttatacatggaaatgcttgatcaagcagtgcaagcatta
aaagatggcaaagagcccacacttgataatctacttcaacaacataccgatgttgatcta
aagatccctgcgttactgcctgatgactatattcctgacgttaacatgcgtttaagcatg
tataagcgtattgcaagtgcaaatacgccaaatgagttagatgagctacaagtcgaatta
atcgatcgctttggcttgctaccagatgcagcgaaaaacttgtttaacgttcaactactc
aagcaaaaagctaatcacttaggaattagtaaagtagaggcgaataataaagggggctat
tttgagtttaatgaatcgacaaaagttaacccaacgttcatcattgctttgatacaaagc
aaccctcgcgtctataaaatggaaggcgccagtaagttacgtttcgcgatagaagaaaaa
aacgggcaagaacgattaaagctgataagcgcaatgatcgaagattttaataaaaaggct
gttgcatga
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