Pseudoalteromonas sp. A25: PA25_18870
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Entry
PA25_18870 CDS
T07990
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psaz
Pseudoalteromonas sp. A25
Pathway
psaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PA25_18870 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psaz03019
]
PA25_18870 (rne)
03009 Ribosome biogenesis [BR:
psaz03009
]
PA25_18870 (rne)
Enzymes [BR:
psaz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PA25_18870 (rne)
Messenger RNA biogenesis [BR:
psaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PA25_18870 (rne)
Ribosome biogenesis [BR:
psaz03009
]
Prokaryotic type
rRNA processing factors
PA25_18870 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BBN81902
LinkDB
All DBs
Position
1:2269657..2272983
Genome browser
AA seq
1108 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAKTYFPSGYTFNGRPNIKDVIKEGQEVIVQVDKEERGQKGAALTTFI
SVAGSYLVLMPNNPRAGGISRRIEGDERIELKEALSRLDLPKGMGLIVRTAGVGKSYEEL
EYDLKALLVHWQAIQEAADSGKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKSRVFEEA
KAHIERFRPDFMSRVKLYQNDVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSKATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVEN
RLKDAVRPDRARVQIGKISRFGLLEMSRQRLRPSLGEASQHSCPRCSGQGTIRSNESIAL
SILRLIEEEAIKDNTAQVNAQVPVTVGAYLLNEKRKSVHRIEKRHNCDVVIIPNQHMETP
HYEVLRLRKDETSQAASYEQMTVPEPEVLEVSRAPAAVKEEPVLKGVVMPTTPAPTPSPV
SQKQAEPETSKNEPSLLTRIGNWLKALFSSDSEDKKDVEQNHKQQEHKPRRNNDNRRKNQ
NRRRNTPKKRDEQSQTTAQEPEARGNDSRNNDNRDKTEGRNKRRRQNQRKRSDVNKPDPE
TAKDESLNTDVESKEVKVKPRRQRRNLRKKVRINEQAEVREDVITNEQDNASVKEQSEKA
QEPAQTVSEASKDIKPADAKQDESQVSDAVAADIKATPAKSQDKEPDASEEASKGEDDAP
KTRSRRSPRHLRAAGQRRRKPEGEKDAEPAFIPVADQAAAEYEAQLKAQSSSKEEVAEVK
SEATPDTVEADAKTPAESVAEAQTDTQPETSAEPVEAKTDAQPETSVEPIEAQTDAQPET
SAEPVEAQTDAQPETSAEPVETQTDAQPETSAEPIEAKTDAQPETPAEPVEAKADAQPDT
PAEPVEAQTDVQDDTADNELADAQPDTVEANAETYAEAIVEDSAQVLVESQPTMEPKASS
SKTATAINGTQDKSRVRYTNNASSPMTKASSVDEQVDMITPSAMPHEAREVVANSGLSAG
SKAPVGHASAAMTSTMVTDSRESAHHAE
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaatgctgatcaatgcgacgcagcaagaagaaatgcgcgtagcactggttgac
ggccaaagattatacgatctagatatcgaaagtcctggtcacgaacagaaaaaagccaat
atatacaagggtaaaattacccgtatcgaaccatcacttgaagccgcatttgtagattat
ggtgctgagcgccacggtttccttcctcttaaagaaattgctaaaacatacttcccaagt
ggttatacctttaacggccgtcctaatatcaaagacgtgatcaaagaaggtcaagaagtt
atcgtgcaagttgataaagaagagcgcggtcaaaaaggcgctgcacttaccacctttatc
agtgttgccggtagctacttggtactaatgccaaacaacccaagagcaggtggtatatct
cgccgaatcgaaggtgatgagcgcattgagctaaaagaggcgcttagtcgtttagaccta
cctaaaggcatgggactgattgtacgcactgcaggtgtgggcaaatcgtatgaagaactt
gaatatgacctaaaagccttattagtgcattggcaagcaattcaagaagccgcagacagt
ggcaaagcgccatttttaattcaccaggaaagtaatgttattttccgtgctattcgcgat
tatttgcgtcgtgatatcggtgagatattaattgataagtctcgtgtgttcgaagaagcc
aaagcgcatattgaacgctttagacctgactttatgagtcgcgtaaagctttatcaaaac
gacgttccgctgtttactcattatcaaattgaaagccaaattgagtctgcattccaacgt
gaagttcgcttgccatctggtggctctattgttattgaccctaccgaagcattaacgtct
atcgatatcaactcttctaaagcaactaagggtggtgatattgaagaaacggcattaaac
actaacttagaagcagcagatgaaattgctagacaactacgtttgcgcgacttaggtggt
ttgattgttattgatttcatcgatatgacaccacctcgccaccagcgtgaggttgaaaac
cgtttaaaagacgcagtacgccctgatagagcacgtgtgcaaattggtaaaatttcacgc
tttggtttattggagatgtctcgccaacgcttacgcccaagcctaggtgaagcaagtcag
cactcgtgcccgcgttgtagcggccaaggcacgatccgatcaaacgaatctatcgcgttg
tctatcctgcgtttaatcgaagaagaagcaatcaaggataacacagcacaagttaacgca
caggttcctgttaccgttggtgcttacttgttaaatgaaaagcgtaaatcggttcataga
attgaaaagcgtcataattgtgatgtggttattattcctaaccaacatatggaaacacca
cattacgaagtgctgcgattacgcaaagatgaaacgtcgcaagcggcaagctatgagcaa
atgacagtaccagagcctgaagtgcttgaagtttcaagagcgccagcagctgtaaaggaa
gagccagtgttaaaaggtgtcgtaatgcctacaacacctgcgcccactcccagcccagtt
tcgcaaaagcaagctgagcctgaaacaagtaagaacgaaccaagcctgttaacccgcatt
ggtaactggttaaaagctttgtttagctctgacagcgaagacaaaaaagatgttgagcaa
aatcacaagcagcaggaacataaacctcgtagaaataacgacaacagacgtaaaaaccaa
aatcgtcgtcgtaatacgcccaagaagcgcgatgaacagtcacaaacaacggctcaagag
ccagaagctcgtggcaatgatagtcgaaataatgacaatcgtgataaaactgagggaaga
aataagcgccgtcgtcaaaatcaacgtaagcgcagcgatgtaaataagcctgatcctgaa
acagctaaagacgagtcgctaaataccgacgtagagagtaaagaggttaaagtaaaacct
cgccgtcagcgtcgtaatttacgcaaaaaagtgcgcatcaatgagcaagctgaagtacgc
gaagacgtaattacaaacgagcaagataatgcatcggttaaagaacaatctgaaaaagct
caagagccggctcagacagtttctgaagcgagtaaagacattaagccagctgacgcaaaa
caagatgaaagccaagtctcagacgcagtagccgctgacatcaaagccacaccagcgaag
tcacaagacaaagagcctgacgcatcagaagaagcgtctaaaggtgaagacgatgcacca
aaaactcgctctcgccgctcgcctcgacatttacgtgctgctgggcaacgccgtcgtaaa
ccagaaggtgaaaaagatgcagagcctgcatttatccctgttgcagatcaagctgctgca
gagtatgaagcgcagctaaaagcacaaagctcaagcaaagaagaagtggcagaagttaaa
tctgaagcaacacctgacactgtagaagctgacgctaagacccctgctgaaagtgttgct
gaagctcaaacagatactcagccagaaacttctgcagagcctgttgaagcgaaaactgac
gctcagccggaaacatcggtagaacctattgaagcgcaaactgatgctcagccagaaaca
tcggcagagcctgttgaagcgcaaactgatgctcagccagaaacatcggcagagcctgtt
gaaacgcaaactgacgctcagccagaaacatcggcagaacctattgaagctaaaactgac
gctcagccagaaactcctgcagagcctgttgaagctaaagctgacgctcagccagacaca
ccagcagagcctgttgaagcgcaaaccgacgttcaagatgatacagctgataatgagctg
gcagatgcacagcctgacacagttgaagcaaatgcggaaacctatgctgaagcaatagtt
gaagattctgcgcaagtactggtcgagtctcagccaacgatggaacctaaggcttcatca
agcaagactgcgactgcgataaatggcacgcaagataagtcaagagtgcgttataccaat
aatgcaagctcaccaatgaccaaggctagcagtgttgatgagcaggttgacatgatcacg
ccatcagctatgccacatgaagcaagagaagtggtagcaaactcaggtttgtcggcaggt
tcaaaagcgcctgttggtcatgctagtgcagctatgacctcaacaatggtaactgactct
cgtgagtctgcgcaccacgcagagtaa
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