Pseudoalteromonas sp. A25: PA25_38730
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Entry
PA25_38730 CDS
T07990
Symbol
sbcC
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
psaz
Pseudoalteromonas sp. A25
Brite
KEGG Orthology (KO) [BR:
psaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psaz03400
]
PA25_38730 (sbcC)
DNA repair and recombination proteins [BR:
psaz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PA25_38730 (sbcC)
Archaeal homologous recombinant proteins
PA25_38730 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
AAA_21
ABC_tran
SMC_N
Motif
Other DBs
NCBI-ProteinID:
BBN83888
UniProt:
A0A5H2Y1U2
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All DBs
Position
2:756630..760292
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AA seq
1220 aa
AA seq
DB search
MKLLSLSIKNLASLTHADVDFESPPLSQSGLFAITGDTGAGKSTLLDGICLALYGKTARL
KNDLKNTVAFNGDEIKLNDPRNLLRRGSAQGQAEAKFIGQDGERYIARWKIERARKKADG
KLKRAEHLLIRCSDESVLTQSSSATVNKVEQLIGLSFEQFTRAVLLAQHEFAAFLKASAD
ERAQLLECLTGTDKFSRLGQAIFERHKEKKSKLEQTKQSLAHYQILTTEELTALNIQLES
LDNELKQLQTQRDQYQQDMQWLNTNEQLQQKHDQYQQLLLEINTQLGAQAPAVEQAQLAQ
VVQQIADNRQQAQMLNAQHSQLQAQHSELSKQDYSQQISEQQNTVASAQRAQQTATEQLK
GQEPKVKQVRALDNQRSVAQQQVSDSQKQIKATQQTVEDNQAQLTDLTDQLSKNKAQQDD
IQTQLAQSSKFASAHKHWSHLNSIFENIKDCSDRIEQYQHQCNEQRTQHQALIQQLDPLK
VQIEQQQQSFNELELQQLEVEKQLSSLDYEAIQKQHYDLKSAINLSSQGQKCEHELLQLA
TSIDKGRHQQTTLKLQLQDTEKQVELHKQRALITQQNLTQVQVRASDNISALRAQLKEGE
ECMVCGATEHPYGVEHIDSHWQALIADFSAQQQSAVKAQQQSQQRYNEQMVAHEQVNAQL
QVSLQRKAQLIEQQAQISEQLKVFGYDAYPNSDEAQQQVQALEQDLKRYSEFSKQQQTLW
SKIKSSQQSLSTCKQQYTEAQQQLQHLTNTIAACEQSTQDNQQNLSKLKNDAQQLFSDDT
WWLSFEHNPHNALDSLRADVEQYDVWQKTAEGLVQTQQQLQSKLESCEHHHHLQSNQLTQ
QQTQLAQLQQTLFELDTQRSQLLALEHNVDDWFGSLQTQLEQSNQQLNQAKEKLARLEHE
KHQQALKLTHLRAQLDDNETQQNTVAERFDTWLNTQREQHQELTTERVSELLSTPFEQYE
QVLEAHHQQQQRHTQAHARLSHLLEEIEHHAAQAHSNASKQALVESLDKIHVNIESTQAQ
WLECNSRLKQHEQNITSRAQQQATLTQLQTQYEHWYLLDKLLGDATGKKLRNIAQTQTLK
ILLQYANQHLRSLSKRYRLTVIGHSLNIAIIDKDMADEQRSVNTLSGGESFLVSLALALG
LASLSANKVQISSLFIDEGFGTLDPETLSVALDALDSLQAQGRKVGVISHVSEMTERVAT
QVHVKKQPGGYSSIQIKGQA
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgcttagcctgtctataaaaaacctcgcatcgttaactcatgctgatgtggac
tttgagtcaccgcctctcagtcaaagcggtttgtttgcgataaccggtgatactggcgct
ggaaagagtacattattggatgggatctgcttagcgctatacggcaagactgcaaggctg
aagaacgatttaaaaaatacagtcgcctttaatggtgatgaaataaaactgaatgaccca
cgaaaccttttgcgccgtggcagcgctcaaggacaggctgaagcaaagtttatagggcaa
gatggtgaacgctatattgctcgttggaaaatagagcgcgctcgaaaaaaagctgatggc
aagcttaagcgagcagagcatctgctaattcgttgcagtgatgagtctgtactcactcaa
tcaagcagtgcaacagttaataaagtcgagcagttgattggtttaagtttcgagcagttt
acgcgagcggtattgctcgctcagcatgagtttgctgcatttttgaaagccagtgcggat
gaacgcgcacaattacttgagtgtttaactggcaccgacaaatttagccgccttggtcag
gcaatttttgagcgtcacaaagaaaaaaaatcaaaacttgaacaaacaaaacaaagttta
gcccactatcaaattctaactactgaagaacttactgcactaaatatacagttagaaagc
cttgataatgaactcaaacaattacaaacccagcgagaccaatatcaacaagatatgcaa
tggctcaataccaatgagcaactgcaacaaaaacatgaccaatatcaacagcttttactt
gagattaatacacaacttggtgcccaagcaccagctgtagagcaggctcaattagcccaa
gttgtacagcaaatagccgacaataggcaacaagcgcaaatgctaaatgctcagcatagt
cagctacaagcacagcatagcgaactgagcaaacaagactattctcaacaaattagcgaa
caacaaaatacggtcgcttcagcacaaagggctcagcaaaccgcaactgagcagctaaaa
gggcaagagcctaaggtcaaacaagtgcgggctttagataatcagcgcagcgttgctcag
caacaagtttctgatagccaaaaacaaataaaagcaacgcaacaaaccgtagaagataat
caagcgcaactgacagatttaactgatcaacttagtaaaaataaagcacagcaagatgac
attcaaacacagctcgcgcaaagcagtaagtttgcaagtgctcataaacactggtcacat
ctaaacagcatatttgagaatataaaggattgttctgatcgcattgagcagtatcagcac
cagtgcaacgagcagcgcacgcagcatcaagcgctgatacagcagctagacccgttaaaa
gtgcaaatagagcagcagcaacagtcattcaatgagcttgaattgcagcagctagaagtt
gagaaacaactgtcgtctttagattatgaagcaatacaaaaacaacactatgatttaaag
tctgcgattaatttatcatcgcaagggcaaaaatgtgagcatgagcttttacaacttgca
accagcattgataaaggtcgccatcaacaaacaacgctcaaattacaacttcaagatact
gaaaaacaggttgaattacataaacaacgcgcgctaataacccaacaaaacctcactcaa
gttcaagtacgcgctagtgacaatatcagcgcgctgcgagcgcagcttaaagagggcgaa
gagtgtatggtatgcggtgccaccgagcacccctatggcgtagagcatattgacagtcac
tggcaagcactcattgccgacttttcagcacagcagcaaagcgcagttaaagctcagcaa
caatcgcagcaacgctataacgagcaaatggttgcgcatgagcaagtgaacgcccagctg
caagtgtctttgcagcgcaaagcgcaacttatcgagcaacaagcacaaattagcgaacag
ttaaaagtatttggctatgatgcttacccaaatagtgatgaagcacaacaacaagtgcaa
gcgcttgaacaagacctcaagcgatatagtgagttcagtaaacagcaacaaacgttatgg
tcaaagattaagtcgtcgcagcagtcccttagtacatgtaagcaacaatatactgaagcg
caacagcaattgcagcatctaacaaacactatcgcagcttgcgaacagagtactcaagac
aatcaacaaaacttgtcaaagctcaaaaacgatgcacaacagctgtttagtgacgatact
tggtggttgagctttgagcacaacccacataatgcgcttgattcactgcgtgctgatgtt
gaacaatatgatgtctggcaaaaaacagccgaagggttagtacaaacgcagcaacaactg
cagtccaagctagaaagttgtgagcaccatcatcatttgcaaagcaatcaacttactcag
caacaaacgcaacttgcgcaactacaacaaacactgttcgagctcgatacgcagcgcagc
caattactcgcgctcgaacataacgttgatgactggtttggatcactgcaaactcagcta
gagcagtcgaatcaacagctcaatcaagccaaagaaaagcttgcacgacttgagcatgaa
aaacaccaacaagcccttaaactgactcacttacgcgctcagcttgatgataatgaaaca
caacaaaataccgtagcagagcgctttgacacatggctaaatacgcaacgagagcaacat
caagaacttacaacggaacgagtcagtgagctgctatcaacgccatttgagcaatatgag
caagtacttgaagcacaccatcaacaacaacagcgtcatacgcaggctcatgctcgactg
agccatcttcttgaagaaattgagcatcatgccgcgcaggctcacagcaatgcctccaaa
caagcgctggtagagtcactagataaaattcatgtaaatattgaatcaacgcaagctcag
tggttggaatgtaacagtcggttaaagcagcatgaacaaaacatcacgtcacgcgctcag
caacaagcaaccctaacacagctgcaaacacagtatgaacattggtacttactagacaaa
ttgctaggagatgccacaggcaaaaagctacgtaatatagcgcaaacgcaaacgctgaaa
attttactacagtatgccaaccagcatttgcgtagtttatcgaaaaggtatcggctaaca
gtgataggccactcacttaacatcgccataatcgacaaagacatggccgatgaacagcgc
tcagttaacaccctctcagggggtgaatcatttttggtttctttagcattagcgctgggc
ttagcgtcgctgtcggcgaacaaagtgcagataagctcgctatttattgatgaagggttt
ggaacacttgaccctgagaccttgagtgttgcgctggatgcgctagactcattgcaagca
caaggccgaaaggtcggcgtgatctctcacgttagtgaaatgacagagcgtgttgcaaca
caagtacacgttaaaaaacagcccggtggttactccagcattcaaataaaaggacaagct
taa
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