Pseudomonas syringae pv. syringae B728a: Psyr_0458
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Entry
Psyr_0458 CDS
T00246
Name
(GenBank) Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psb
Pseudomonas syringae pv. syringae B728a
Pathway
psb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psyr_0458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psb03019
]
Psyr_0458
Enzymes [BR:
psb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Psyr_0458
Messenger RNA biogenesis [BR:
psb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Psyr_0458
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AAY35528
UniProt:
Q4ZZ94
LinkDB
All DBs
Position
complement(494944..496833)
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AA seq
629 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLL
AHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDV
RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARGDGDKNNGGRRD
KGKDKGKEKPAAASATGERPARQPREKKPREGTPRSEQRASQPATPRPAADRAPDEFRDD
EVDNFGNRADYVSPYQGKGQNRGRRPAAAPGAAAPAAGGAARPANPGRPAGGARNGSGSG
APKRNGSGSSAPRSRDGQPRGRRPAREDQPLPREGQEPAARAPRDGQPQPKIVHKESKID
RFPSAEQLDQLPSRPRGEKPALLTRNRDS
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagccggc
tatacccagcctacccccgtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagaccggtactggtaaaaccggcggtttcgccctccctattctg
gagcggctgtttcccaatggtgttccggacaaatcccagcgtcacggcccgcgtcaaccg
cgcgttctggtcctgaccccgacccgcgaactggccgcacaggtgcacgagagcttcaag
ctctatgcccgcgacctgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccgcaggttcaggccatgtcccgtggtgtggacgtcctggtggcctgccctggccgcctg
ctcgacctggccggtcaaggcagtgtcgacctctcccacgtcgaaatcctggtgctcgat
gaagcagaccggatgctcgacatgggcttcgtgcatgacgtcaagaaggtcctcgcgcgg
ctgccggccaagcgccagaacctgctgttctcggctaccttctccaatgacatcacgtcg
ttggccggcaagctgctgcacaacccagagcgcatcgaagtcacgccgccgaacaccacg
gtcgagcgcatcgagcaacgggttttccgcctggcagccaaccacaagcgttcgctgctg
gcgcacctgattaccgtcggcgcctgggaacaggtgctggtcttcacccgcaccaagcac
ggtgccaaccgtctggccgagtacctggacaagcacggccttgcggctgtcgcgatccac
ggcaacaagagccagaacgcccggaccaaggccctggccgacttcaaggcaggcgatgta
cgcatcatggtcgcgaccgatatcgccgcacgcggcctggatatcgatcagttgccgcat
gtcgtcaacttcgagctgcccaacgtcgacgaagactacgtgcaccgtatcggtcgtacc
ggccgtgccggtcgctctggtgaagccatttcgctggttgcgccggacgaagagaagctg
ctcaaaagcatcgagcgcatgaccaagcagaagatcgccgacggcgacctgatgggcttc
gacatcactgcagtcgaggctgagaagcctgaagtgcgtgagcgtccggatgttcgcaac
tcgcgtggcgcacgtcctgcacgtggcgatggcgacaagaacaacggtggtcgtcgcgac
aagggcaaggataaaggcaaggaaaaacctgctgctgcctccgccactggcgaacgccct
gcaaggcagccacgcgaaaaaaaacctcgtgagggcacgcctcgcagcgaacagcgtgca
tcgcaacccgccacaccgcgcccggcagccgatcgtgcccctgacgagttccgtgacgat
gaagtagacaactttggcaaccgcgcggactacgtcagtccttatcagggcaaaggccag
aaccgtggtcgtcgccctgctgccgcgcctggcgcagccgcaccggccgctggcggcgct
gctcgcccggccaatccgggtcgccctgccggtggcgctcgcaacggctcgggcagtggc
gcgccaaagcgcaacggctcgggttcatcggcaccacgctcgcgtgatggtcagccacgt
ggccgtcgtccggcacgtgaagaccagcccttgccacgtgaaggtcaggagccagccgca
cgcgcaccacgcgacggccagcctcagccgaagatcgtgcacaaggaatccaagatcgac
cgtttcccgtctgccgagcaactggaccagttgccaagccgcccacgcggtgaaaaaccg
gccctgctgacccgcaaccgcgacagctga
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