Pseudomonas syringae pv. syringae B728a: Psyr_0579
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Entry
Psyr_0579 CDS
T00246
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
psb
Pseudomonas syringae pv. syringae B728a
Pathway
psb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psyr_0579
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psb03019
]
Psyr_0579
03016 Transfer RNA biogenesis [BR:
psb03016
]
Psyr_0579
Enzymes [BR:
psb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Psyr_0579
Messenger RNA biogenesis [BR:
psb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Psyr_0579
Transfer RNA biogenesis [BR:
psb03016
]
Prokaryotic type
tRNA degradation factors
Psyr_0579
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AAY35649
UniProt:
Q4ZYX3
LinkDB
All DBs
Position
659938..662571
Genome browser
AA seq
877 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILQHLAERGSPASREQLVEEFGLTTEDQFEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVISRAHESIVGRYFEESGIGFVVPDNPKIQQEV
LVTPGRNNGAKIGQFVEVKITHWPTPRFQPQGDVIEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKEHRVDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDAESQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDR
LAMVCEMTISKTGEMTDYVFYEGIIHSHARLTYNKVSTILEQPKTAEAKSLRGEYGDVVP
HLKQLYAMYKVLLGARHVRGAIDFETQETRIIFGSERKIAEIRPTTRNDAHKLIEECMLA
ANVATAQFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLTLHKGKEGPTPKDYQALLE
TVRDRPDYHLIQTVMLRSLSQAVYSSDNNGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIRSKQDTPHVRRAGAATIPKARIYPYDDALLDQLGEQCSMSERRADEATRDVVNWLKCE
YMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPLHHRLAGERTG
RNFRLGDTVEVRVMRVDLDERKIDFEISEAAAAAKPTARKRRGNDTAAPAATTTAEKDKA
PAKSGRRSASTKESSPEAYRPSDAAAKNAEVRKSRELKKALLADAKGGSKASSGKSDRSG
SAPSSGKPASKHRKGSSKTGSAPAAKSSGARKPKAKS
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatacgaaaac
cctattcccagccgcgagctgatcttgcagcaccttgccgagcgcggttcgccggccagt
cgcgagcaactggtcgaagagttcggcctgaccaccgaagatcaattcgaggctctgcgc
cgccgccttcgggcgatggagcgtgacgcccagttgatctacacccgtcgcggcacttac
gcaccggtagacaagcttgacctgatcctcggtcgcatctccgggcatcgtgatggcttc
ggctttctggtgccggacgacggctccgacgacctgttcatgagcccggcgcaaatgcgc
ctggtgttcgacggtgaccgggcgctggcgcgtgtttccggccttgaccgtcgcggccgc
cgcgaaggcgtgatcgtcgaagtgatctcgcgtgctcacgaaagcatagtgggtcgctat
ttcgaagaaagcggcattggttttgtcgtacccgacaacccgaaaatccagcaggaagtg
ctggtaacgccgggtcgtaacaacggcgccaagatcggccagttcgtcgaggtgaaaatc
acccattggccgacaccgcgattccagccgcagggcgatgtgatcgaagtggtgggcaac
tacatggcgcccggcatggagatcgatgtcgcgctacgtacctacgacattccgcacgtg
tggcccgaggccgtactcaaagaggctgccaagctcaagccggaagtcgaagagaaggac
aaggaacaccgcgtcgatctgcgccatctgccgttcgtgaccatcgacggcgaagacgct
cgcgacttcgacgatgcggtctattgcgaagccaaaccgggcaaactgcgtttgttctcc
ggcggctggaagctctacgtggcgattgccgacgtatcgagctacgtgaagatcggctcg
gcgctggatgccgaatcccaggtgcgcggcaactcggtgtatttccccgagcgcgtcgtg
cccatgctgcctgagcaattgtccaacggcctgtgctcgctgaacccgcacgtcgatcgt
ctggccatggtttgcgagatgaccatctccaagaccggcgagatgactgactacgtgttc
tacgaaggcatcatccactcccacgctcgcctgacctacaacaaggtcagcacgattctg
gaacagccgaaaaccgctgaagccaagagcctgcgtggcgagtacggcgatgtggtgccg
cacctcaaacagctttatgccatgtacaaggtattgctgggcgcgcgtcatgtgcgcggt
gcgatcgatttcgagacgcaggaaacccggatcatcttcggttccgagcgcaagattgcc
gaaatccgtccgaccactcgtaatgatgcccacaagttgatcgaggaatgcatgctggcc
gccaacgtggccaccgcgcagttcctgaagaagcatgaaattcctgcgttgtaccgcgtc
cacgacggtccgccgccagagcgcctggaaaaactgcgcgcattcctgggtgagctgggt
ctgacgctgcacaagggcaaggaaggtccgacaccgaaggattatcaggcgctgcttgaa
accgttcgcgaccgtcccgactaccacctgatccagaccgtgatgctgcgttcgttgagt
caggcggtctacagctcggacaacaacggtcacttcggtctgaattacgaagcgtacacg
cacttcacgtcgccgatccgtcgttatccggacctgctgactcatcgcgcgatccgcagt
gtcattcgctccaagcaggatacgccgcacgttcgtcgtgccggcgcggccacgattccg
aaggcgcgcatttacccgtacgacgatgcgctgctcgaccagttgggcgaacaatgctcg
atgagcgagcgccgtgccgacgaggctacgcgcgacgtagtcaactggctcaagtgcgaa
tacatgaaggatcgcgtcggcgagtcgttcccgggcgtgatcaccgctgtaaccggcttt
ggtctgttcgtcgagctcaccgatatctatgtcgaaggcctggtccacgtgaccgccttg
ccgggtgactactaccacttcgatccgctgcaccaccgccttgccggcgagcgtaccggg
cgtaacttccgcctgggcgacaccgttgaagtgcgggtcatgcgcgtcgatctggacgag
cgcaagatcgatttcgagatctccgaagcggcagcggctgcgaagccgacggcgcgcaag
cgtcgtggtaatgacaccgcggcacctgctgccaccaccacggctgaaaaggacaaggcg
ccggccaagtccgggcgtcgtagcgcttcgaccaaggaaagcagccccgaagcgtatcgc
ccgagcgatgccgcggcgaaaaacgcagaagtgcgtaaaagccgcgagctgaaaaaagcg
cttctggcagacgcgaagggtggtagcaaggcatcgtcgggaaagtctgacaggtcgggc
tctgcgccttcatcgggcaagccggccagcaaacaccgtaaaggctcgtcaaaaacgggc
tccgcgccagctgcgaaaagcagtggcgctcgtaaacccaaggccaagtcatga
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